Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01773 ATGGGTAAGGAAAAGACTCACATCAACATTGTGGTCATTGGTCATGTCGACTCTGGCAAGTCGACCACTACTGGCCATTTGATTTACAAGCTTGGAGGTATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCGTTCAAGTATGCCTGGGTGTTGGACAAACTGAAGGCCGAACGTGAGCGTGGTATCACAATTGATATTCCTCTGTGGAAGTTCGAGACCACCAAGTATTACTGCACTGTGATTGATGCTCCTGGGCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGTGCTGTTCTTATTATCGACTCCACTACTGGAGGTTTTGAAGCTGGTATTTCTAAGGATGGGCAGACCCGTGAACACGCCCTTCTTGCATTTACCCTTGGTGTCAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCCACCACGCCCAAGTACTCGAAATCTAGGTACGATGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGATCCACCAACCTCGACTGGTACAAGGACCGACCCTTCTTGAGGCTCTCGATCTGATCCAAGAGCCTAAGAGGCCATCTGACAAACCCCTTCGTCTTCCACTTCAGGATGTCTACAAGATTGGAGGTATTGGAACTGTTCCAGTGGGTCGTGTTGAAACTGGCATTATAAAGCCTGGTATGGTGGTAACCTTTGCTCCATCTGGACTGACTACTGAAGTTAAGTCTGTGGAGATGCACCACGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAACGTGGGGTTCAACGTGAAGAATGTTGCTGTGAAGGATCTCAAGCGTGGTTATGTTGCCTCAAATTCCAAGGATGATCCTGCCAAGGAAGCTGCCAATTTCACGTCCCAAGTTATCATCATGAACCATCCAGGACAGATTGGAAATGGTTATGCACCTGTACTCGATTGCCACACATCTCACATTGCTGTCAAATTTGCCGAGATTTTAACTAAGATTGACAGGCGATCTGGTAAAGAACTGGAGAAAGAGCCCAAGTTTTTGAAGAACGGAGATGCTGGATTTGTTAAGATGATTCCCACCAAGCCCATGGTGGTAGAAACATTCTCTGCGTATCCCCCTCTTGGACGATTTGCCGTGAGGGACATGCGTCAAACTGTGGCTGTTGGTGTCATCAAGGCCGTTGAGAAGAAGGATGCATCCGGCGCCAAGGTCACCAAGTCTGCAGCAAAGAAATCAGGGAAGTGA 1278 47.1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIPLWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKIHQPRLVQGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTKSAAKKSGK* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21091875 21093311 - CsaV3_5G025920.1 Csa05g01773 530160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01773 425 PANTHER TRANSLATION FACTOR 189 422 - -
Csa05g01773 425 Pfam Elongation factor Tu C-terminal domain 297 405 IPR004160 -
Csa05g01773 425 PANTHER ELONGATION FACTOR 1-ALPHA 1 1 181 - -
Csa05g01773 425 PANTHER ELONGATION FACTOR 1-ALPHA 1 189 422 - -
Csa05g01773 425 Pfam Elongation factor Tu GTP binding domain 5 206 IPR000795 GO:0003924|GO:0005525
Csa05g01773 425 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Csa05g01773 425 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Csa05g01773 425 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Csa05g01773 425 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Csa05g01773 425 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Csa05g01773 425 Gene3D Translation factors 205 292 - -
Csa05g01773 425 SUPERFAMILY Translation proteins 207 297 IPR009000 -
Csa05g01773 425 CDD EF1_alpha_II 206 296 - -
Csa05g01773 425 CDD EF1_alpha_III 299 402 - -
Csa05g01773 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 225 IPR027417 -
Csa05g01773 425 CDD EF1_alpha 9 203 - -
Csa05g01773 425 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 302 405 IPR009001 -
Csa05g01773 425 Gene3D Translation factors 299 406 - -
Csa05g01773 425 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 206 IPR000795 GO:0003924|GO:0005525
Csa05g01773 425 PANTHER TRANSLATION FACTOR 1 181 - -
Csa05g01773 425 Pfam Elongation factor Tu domain 2 224 289 IPR004161 GO:0005525
Csa05g01773 425 Gene3D - 1 204 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01773 Csa-Chr5:21091875 Csa06g01672 Csa-Chr6:14653265 0 dispersed
Csa05g01771 Csa-Chr5:21083649 Csa05g01773 Csa-Chr5:21091875 0 proximal
Csa05g01773 Csa-Chr5:21091875 Csa05g01774 Csa-Chr5:21096530 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01773 K03231 - csv:101220517 820.461