Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g01773 | ATGGGTAAGGAAAAGACTCACATCAACATTGTGGTCATTGGTCATGTCGACTCTGGCAAGTCGACCACTACTGGCCATTTGATTTACAAGCTTGGAGGTATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCGTTCAAGTATGCCTGGGTGTTGGACAAACTGAAGGCCGAACGTGAGCGTGGTATCACAATTGATATTCCTCTGTGGAAGTTCGAGACCACCAAGTATTACTGCACTGTGATTGATGCTCCTGGGCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGTGCTGTTCTTATTATCGACTCCACTACTGGAGGTTTTGAAGCTGGTATTTCTAAGGATGGGCAGACCCGTGAACACGCCCTTCTTGCATTTACCCTTGGTGTCAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCCACCACGCCCAAGTACTCGAAATCTAGGTACGATGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGATCCACCAACCTCGACTGGTACAAGGACCGACCCTTCTTGAGGCTCTCGATCTGATCCAAGAGCCTAAGAGGCCATCTGACAAACCCCTTCGTCTTCCACTTCAGGATGTCTACAAGATTGGAGGTATTGGAACTGTTCCAGTGGGTCGTGTTGAAACTGGCATTATAAAGCCTGGTATGGTGGTAACCTTTGCTCCATCTGGACTGACTACTGAAGTTAAGTCTGTGGAGATGCACCACGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAACGTGGGGTTCAACGTGAAGAATGTTGCTGTGAAGGATCTCAAGCGTGGTTATGTTGCCTCAAATTCCAAGGATGATCCTGCCAAGGAAGCTGCCAATTTCACGTCCCAAGTTATCATCATGAACCATCCAGGACAGATTGGAAATGGTTATGCACCTGTACTCGATTGCCACACATCTCACATTGCTGTCAAATTTGCCGAGATTTTAACTAAGATTGACAGGCGATCTGGTAAAGAACTGGAGAAAGAGCCCAAGTTTTTGAAGAACGGAGATGCTGGATTTGTTAAGATGATTCCCACCAAGCCCATGGTGGTAGAAACATTCTCTGCGTATCCCCCTCTTGGACGATTTGCCGTGAGGGACATGCGTCAAACTGTGGCTGTTGGTGTCATCAAGGCCGTTGAGAAGAAGGATGCATCCGGCGCCAAGGTCACCAAGTCTGCAGCAAAGAAATCAGGGAAGTGA | 1278 | 47.1 | MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIPLWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKIHQPRLVQGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTKSAAKKSGK* | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 21091875 | 21093311 | - | CsaV3_5G025920.1 | Csa05g01773 | 530160 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g01773 | 425 | PANTHER | TRANSLATION FACTOR | 189 | 422 | - | - | |
Csa05g01773 | 425 | Pfam | Elongation factor Tu C-terminal domain | 297 | 405 | IPR004160 | - | |
Csa05g01773 | 425 | PANTHER | ELONGATION FACTOR 1-ALPHA 1 | 1 | 181 | - | - | |
Csa05g01773 | 425 | PANTHER | ELONGATION FACTOR 1-ALPHA 1 | 189 | 422 | - | - | |
Csa05g01773 | 425 | Pfam | Elongation factor Tu GTP binding domain | 5 | 206 | IPR000795 | GO:0003924|GO:0005525 | |
Csa05g01773 | 425 | PRINTS | GTP-binding elongation factor signature | 9 | 22 | IPR000795 | GO:0003924|GO:0005525 | |
Csa05g01773 | 425 | PRINTS | GTP-binding elongation factor signature | 148 | 157 | IPR000795 | GO:0003924|GO:0005525 | |
Csa05g01773 | 425 | PRINTS | GTP-binding elongation factor signature | 104 | 115 | IPR000795 | GO:0003924|GO:0005525 | |
Csa05g01773 | 425 | PRINTS | GTP-binding elongation factor signature | 68 | 76 | IPR000795 | GO:0003924|GO:0005525 | |
Csa05g01773 | 425 | PRINTS | GTP-binding elongation factor signature | 88 | 98 | IPR000795 | GO:0003924|GO:0005525 | |
Csa05g01773 | 425 | Gene3D | Translation factors | 205 | 292 | - | - | |
Csa05g01773 | 425 | SUPERFAMILY | Translation proteins | 207 | 297 | IPR009000 | - | |
Csa05g01773 | 425 | CDD | EF1_alpha_II | 206 | 296 | - | - | |
Csa05g01773 | 425 | CDD | EF1_alpha_III | 299 | 402 | - | - | |
Csa05g01773 | 425 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 225 | IPR027417 | - | |
Csa05g01773 | 425 | CDD | EF1_alpha | 9 | 203 | - | - | |
Csa05g01773 | 425 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 302 | 405 | IPR009001 | - | |
Csa05g01773 | 425 | Gene3D | Translation factors | 299 | 406 | - | - | |
Csa05g01773 | 425 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 5 | 206 | IPR000795 | GO:0003924|GO:0005525 | |
Csa05g01773 | 425 | PANTHER | TRANSLATION FACTOR | 1 | 181 | - | - | |
Csa05g01773 | 425 | Pfam | Elongation factor Tu domain 2 | 224 | 289 | IPR004161 | GO:0005525 | |
Csa05g01773 | 425 | Gene3D | - | 1 | 204 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g01773 | Csa-Chr5:21091875 | Csa06g01672 | Csa-Chr6:14653265 | 0 | dispersed | |
Csa05g01771 | Csa-Chr5:21083649 | Csa05g01773 | Csa-Chr5:21091875 | 0 | proximal | |
Csa05g01773 | Csa-Chr5:21091875 | Csa05g01774 | Csa-Chr5:21096530 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g01773 | K03231 | - | csv:101220517 | 820.461 |