Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01776 ATGGGGAAGAAGGGGGGTTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGACATCTGCAGAGCCAGCTTCATTCGATGTGTCGATTCTACCAATTGAAGAGGTAAAATTAGCAGATGCAGAGAATGAACAGAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCAGAGGCAGCCGTTGCAGCTGCTCAGGCTGCAGCGGAGGTCGTTCGGCTTACTACTATCCCTCGATACTCTGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATTTGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGTATGCAGACTCTTGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGACAGCTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAACTATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTAGCTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAGTTCTTCAAAATCTGCAAACTCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAAACTAAGAGCACCATGGATTATCACGATCGTGGCTCCGTCAAGAGCGTGATCAGCCACACAACCTCGATCGGAGACATCGCCAAAGCTTACGCCCGTCGCGATCTCAATCTCGACATCATCAAGCAGTTTCCAAGGACTCCGACGAGCCAAAAAACAAGCCGAGCTCCGAGTCACCAATCGCCAGCGACTCCTACGAAGGCATATTCGTCACTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATTGGGTGGAGCGGAGACGCGGATTCCAGAAGCGCATTGAGCATCAAATCGGAAAGGTACAGGCGACACAGCATTGCTGGATCATCAGTGAGAGATGATGAAAGCTTCACGAGTTCACCGTCGGTTCCAAGCTACATGGCATCAACAGAAGCAGCGAGGGCTAGGTCCAGGTTGTCGAGCCCAATGGGAACAGAGAAGACGGCAGGAACTCCGGGGAGTGTGGGAGCAAAGAAACGGCTGTCATTCCCAGGGTCGCCGGCGAACTCAAGGAGGCACTCTGGTCCGCCGAAACTAGAGGCTAGTCCGATCAAGAATGTTGGAGAGAGAGAATTCACCGGCGAGAGCAGATAG 1449 49.0 MGKKGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVTSAEPASFDVSILPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANYEWNDSTKSKEQIEARLANRQEAATRRERALAYAYSHQNSWKSSSKSANSTFMDPNNPRWGWSWLERWMAARPWETKSTMDYHDRGSVKSVISHTTSIGDIAKAYARRDLNLDIIKQFPRTPTSQKTSRAPSHQSPATPTKAYSSLSAGRKLKPDSPRGIGWSGDADSRSALSIKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAGTPGSVGAKKRLSFPGSPANSRRHSGPPKLEASPIKNVGEREFTGESR* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21108732 21113005 + CsaV3_5G025950.1 Csa05g01776 530163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01776 482 MobiDBLite consensus disorder prediction 396 412 - -
Csa05g01776 482 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Csa05g01776 482 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 468 - -
Csa05g01776 482 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515
Csa05g01776 482 PANTHER IQ-DOMAIN 5-RELATED 1 468 - -
Csa05g01776 482 SMART iq_5 113 135 IPR000048 GO:0005515
Csa05g01776 482 Coils Coil 177 197 - -
Csa05g01776 482 MobiDBLite consensus disorder prediction 326 374 - -
Csa05g01776 482 MobiDBLite consensus disorder prediction 391 482 - -
Csa05g01776 482 Gene3D iswi atpase 111 149 - -
Csa05g01776 482 MobiDBLite consensus disorder prediction 326 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01776 - - - csv:101209731 880.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03255 Csa-Chr3:29810694 Csa05g01776 Csa-Chr5:21108732 2.59E-87 dispersed
Csa04g02549 Csa-Chr4:25138287 Csa05g01776 Csa-Chr5:21108732 4.93E-42 dispersed
Csa05g00047 Csa-Chr5:217410 Csa05g01776 Csa-Chr5:21108732 7.69E-23 dispersed
Csa05g01776 Csa-Chr5:21108732 Csa05g02825 Csa-Chr5:28733999 5.64E-135 dispersed
Csa03g00728 Csa-Chr3:6503510 Csa05g01776 Csa-Chr5:21108732 1.18E-33 transposed
Csa04g00272 Csa-Chr4:1690661 Csa05g01776 Csa-Chr5:21108732 6.92E-26 transposed
Csa05g01641 Csa-Chr5:19491414 Csa05g01776 Csa-Chr5:21108732 3.40E-37 transposed
Csa06g00706 Csa-Chr6:5764857 Csa05g01776 Csa-Chr5:21108732 5.62E-37 transposed
Csa06g00891 Csa-Chr6:7163142 Csa05g01776 Csa-Chr5:21108732 1.96E-38 transposed
Csa07g00302 Csa-Chr7:2283966 Csa05g01776 Csa-Chr5:21108732 4.58E-17 transposed
Csa07g01106 Csa-Chr7:10683382 Csa05g01776 Csa-Chr5:21108732 3.88E-08 transposed
Csa04g01422 Csa-Chr4:14218935 Csa05g01776 Csa-Chr5:21108732 4.69E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g474 . Blo13g00915 . Bda15g00176 . . . Bma08g01144 . Cmo04g01429 Cma04g01355 Cma18g00883 Car04g01432 Car18g00808 . Cpe13g00819 Cpe09g00427 . . . . . . . Cla05g02129 Cam05g2284 Cec05g2305 . . . Cre05g2265 . Cone5ag0328 . Cone18ag0502 Lsi02g01698 . Chy10g01339 Cme10g00057 Blo13g00730 . . . Bpe04g01873 . . Bma08g00947 . Cmo04g02721 Cmo15g00445 Cma04g02600 Cma15g00434 Car04g02506 Car15g00406 Cpe01g01224 Cpe01g02257 . . . . . . . . . . . . . . Lsi04g00055 Csa05g01776 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01776 . 1 470 IQD Protein Family AT3G52290 55.6 5.8e-104 374.8
Csa01g03281 . 1 406 IQD Protein Family AT3G22190 57.6 9.8e-96 347.4
Csa04g02549 . 1 438 IQD Protein Family AT2G26180 60.5 3.4e-117 418.7
Csa06g03677 . 1 274 IQD Protein Family AT2G33990 52.9 1.5e-62 236.5
Csa04g00841 . 217 392 IQD Protein Family AT2G33990 54.7 7.3e-49 191.0
Csa06g03677 . 1 232 IQD Protein Family AT3G15050 51.3 1.2e-56 216.9
Csa04g00841 . 220 393 IQD Protein Family AT3G15050 61.6 7.4e-54 207.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40