Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01776 ATGGGGAAGAAGGGGGGTTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGACATCTGCAGAGCCAGCTTCATTCGATGTGTCGATTCTACCAATTGAAGAGGTAAAATTAGCAGATGCAGAGAATGAACAGAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCAGAGGCAGCCGTTGCAGCTGCTCAGGCTGCAGCGGAGGTCGTTCGGCTTACTACTATCCCTCGATACTCTGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATTTGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGTATGCAGACTCTTGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGACAGCTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAACTATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTAGCTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAGTTCTTCAAAATCTGCAAACTCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAAACTAAGAGCACCATGGATTATCACGATCGTGGCTCCGTCAAGAGCGTGATCAGCCACACAACCTCGATCGGAGACATCGCCAAAGCTTACGCCCGTCGCGATCTCAATCTCGACATCATCAAGCAGTTTCCAAGGACTCCGACGAGCCAAAAAACAAGCCGAGCTCCGAGTCACCAATCGCCAGCGACTCCTACGAAGGCATATTCGTCACTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATTGGGTGGAGCGGAGACGCGGATTCCAGAAGCGCATTGAGCATCAAATCGGAAAGGTACAGGCGACACAGCATTGCTGGATCATCAGTGAGAGATGATGAAAGCTTCACGAGTTCACCGTCGGTTCCAAGCTACATGGCATCAACAGAAGCAGCGAGGGCTAGGTCCAGGTTGTCGAGCCCAATGGGAACAGAGAAGACGGCAGGAACTCCGGGGAGTGTGGGAGCAAAGAAACGGCTGTCATTCCCAGGGTCGCCGGCGAACTCAAGGAGGCACTCTGGTCCGCCGAAACTAGAGGCTAGTCCGATCAAGAATGTTGGAGAGAGAGAATTCACCGGCGAGAGCAGATAG 1449 49.0 MGKKGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVTSAEPASFDVSILPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANYEWNDSTKSKEQIEARLANRQEAATRRERALAYAYSHQNSWKSSSKSANSTFMDPNNPRWGWSWLERWMAARPWETKSTMDYHDRGSVKSVISHTTSIGDIAKAYARRDLNLDIIKQFPRTPTSQKTSRAPSHQSPATPTKAYSSLSAGRKLKPDSPRGIGWSGDADSRSALSIKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAGTPGSVGAKKRLSFPGSPANSRRHSGPPKLEASPIKNVGEREFTGESR* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21108732 21113005 + CsaV3_5G025950.1 Csa05g01776 530163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01776 482 MobiDBLite consensus disorder prediction 396 412 - -
Csa05g01776 482 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Csa05g01776 482 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 468 - -
Csa05g01776 482 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515
Csa05g01776 482 PANTHER IQ-DOMAIN 5-RELATED 1 468 - -
Csa05g01776 482 SMART iq_5 113 135 IPR000048 GO:0005515
Csa05g01776 482 Coils Coil 177 197 - -
Csa05g01776 482 MobiDBLite consensus disorder prediction 326 374 - -
Csa05g01776 482 MobiDBLite consensus disorder prediction 391 482 - -
Csa05g01776 482 Gene3D iswi atpase 111 149 - -
Csa05g01776 482 MobiDBLite consensus disorder prediction 326 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03255 Csa-Chr3:29810694 Csa05g01776 Csa-Chr5:21108732 2.59E-87 dispersed
Csa04g02549 Csa-Chr4:25138287 Csa05g01776 Csa-Chr5:21108732 4.93E-42 dispersed
Csa05g00047 Csa-Chr5:217410 Csa05g01776 Csa-Chr5:21108732 7.69E-23 dispersed
Csa05g01776 Csa-Chr5:21108732 Csa05g02825 Csa-Chr5:28733999 5.64E-135 dispersed
Csa03g00728 Csa-Chr3:6503510 Csa05g01776 Csa-Chr5:21108732 1.18E-33 transposed
Csa04g00272 Csa-Chr4:1690661 Csa05g01776 Csa-Chr5:21108732 6.92E-26 transposed
Csa05g01641 Csa-Chr5:19491414 Csa05g01776 Csa-Chr5:21108732 3.40E-37 transposed
Csa06g00706 Csa-Chr6:5764857 Csa05g01776 Csa-Chr5:21108732 5.62E-37 transposed
Csa06g00891 Csa-Chr6:7163142 Csa05g01776 Csa-Chr5:21108732 1.96E-38 transposed
Csa07g00302 Csa-Chr7:2283966 Csa05g01776 Csa-Chr5:21108732 4.58E-17 transposed
Csa07g01106 Csa-Chr7:10683382 Csa05g01776 Csa-Chr5:21108732 3.88E-08 transposed
Csa04g01422 Csa-Chr4:14218935 Csa05g01776 Csa-Chr5:21108732 4.69E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01776 - - csv:101209731 880.167