Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01777 ATGCAATCGTCGTCGCCACCACCGTGTACAGTGGTTCTTAGCCCTTGCGCCGCTTGTAAGATCCTCCGTCGGCGATGTGTCGATAAGTGTATTTTAGCACCATATTTTCCTCCGACTGACCCTTTCAAGTTCGCCGCCGTCCACAGAATATACGGAGCCGGCAACGTCATCAAGTTCTTGCAGGAATTGCCAGAGGGTCAGAGAGCGGACGCTGCAAGTAGTTTGGTATACGAAGCGAATGCGAGAATTCGAGACCCAATCTATGGGTGCACCGGTTCAATATTTCAACTTCAAAATAAAGTGAGGGAGCTGCATGCACAATTAGCTGTGGCAAAGGCTGAGGTTCATAAGATGCAGCAACTTCAACATCCAAATTTGTTAGCCCTACCAAGAAGTCTCCAAATTTTCTCCCTCCCTCGACAATCGCGTCTCGAGCTCTCTCTGTCTCTGCAATTTCTCCACCCACCTTCCAAATCCGCCGCATCGAATTTCTTCGACCTCCCGGACTCGGCCGGCGTCAAGGCGGTGGAGTTTCGAATTGGATTGGGTGAAACCCACCTTGACGGAGACCAGGATTGGTGCTATGAGTTTAGAATGGAAAGTAATAGAATTCTTGAGAACGTTGATGGGCCTTGGTGGAGTCAGTCAGGGCCCACGGAGAGGTCGTGGGCTTGGGTAATATCAGTTGGAGCTGATAGAGAGGAAATGTCAGTGGCCCTTGACACGATCAAATTGGCAACATGTCTTGAGGGATTTGTTGAGAAAGAATTGTAA 774 49.48 MQSSSPPPCTVVLSPCAACKILRRRCVDKCILAPYFPPTDPFKFAAVHRIYGAGNVIKFLQELPEGQRADAASSLVYEANARIRDPIYGCTGSIFQLQNKVRELHAQLAVAKAEVHKMQQLQHPNLLALPRSLQIFSLPRQSRLELSLSLQFLHPPSKSAASNFFDLPDSAGVKAVEFRIGLGETHLDGDQDWCYEFRMESNRILENVDGPWWSQSGPTERSWAWVISVGADREEMSVALDTIKLATCLEGFVEKEL* 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21124562 21128598 + CsaV3_5G025960.1 Csa05g01777 530164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01777 257 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Csa05g01777 257 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Csa05g01777 257 Coils Coil 94 121 - -
Csa05g01777 257 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 166 - -
Csa05g01777 257 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 8 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01777 Csa-Chr5:21124562 Csa06g01663 Csa-Chr6:14608411 7.43E-57 dispersed
Csa05g00625 Csa-Chr5:4131728 Csa05g01777 Csa-Chr5:21124562 4.40E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31764 PF03195 LOB 3.60E-39 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01777 - - vvi:104879565 195.667