Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01805 ATGGAGATTACATACTCATCACCTAGCGCCAACAGTCTTTCTTTCTCTAATTCCGCCATGCCTACCTCCGGCCGACCTGTTAAGGTTATTCCATTGCAGCATCCTACTACGTCGTCGTCTTCTACGACTGGTGGCTTTGGCGCCGGTACTCTGGTGAAGTCATGGACGACGAAGGTTAAGCGGATGACTTGGATTCACTGGATGGAGCTTCTCTTACCTTGTTCTCGTTGGATTAGAACGTATAAATGGCGGGAGTATTTACAGAGCGATCTCTTGTCTGGGATTACTATTGGTATCATGCTCGTTCCGCAGGCAATGTCTTATGCAAAACTAGCCGGGCTTCGACCGATATATGGACTTTATTCAGGTTTTCTCCCTTTGTTTGTCTATGCAATATTTGGTTCTTCTCGTCAGCTTGCCGTTGGTCCAGTAGCATTGGTTTCTTTACTGGTTTCCAATGTCTTGGGTGGAATTGTCAATTCATCTGAGGAATTATATACTGAACTCGCTATATTATTGGCACTTATGGTTGGAATATTGGAATGCACAATGGGTCTTTTGAGGCTTGGATGGCTTATTCGCTTTATCAGCCACTCTGTAATCTCTGGCTTTACTACAGCTTCTGCCTTTGTGATTGGATTATCCCAAGTGAAATACTTTCTGGGGTATGATGTATCAAGAAGTAGCAGAATCATCCCTCTTATTGAGAGCATAATAGCTGGAGCAGACGGGTTCTTATGGGCACCTTTTATAATGGGATCAGCTATCCTTGCGGTACTCCAAATCATGAAGCATTTGGGAAAAACAAGGAAGCACTTACGGTTTCTCAGAGTTGCTGGTCCCCTTACAGCAGTTGTTATGGGCACAACTTTAGCGAAAGTATTAAATCTACCTTCCATCTCTTTGGTTGGAGACATTCCCCAAGGCCTTCCAACGTTTTCAATTCCTAAGAGATTTGAGCATGTGAAGTCGCTGATTCCAACTGCCTTTCTAATTACTGGAGTGGCTATATTGGAATCTGTTGGGATTGCCAAAGCATTAGCAGCCAAGAACGGGTACGAGTTAGATTCAAATCAGGAGTTATTTGGCCTTGGAGTAGCCAATGTTGTTGGCTCATTTTTTTCTGCATATCCTACAACAGGTTCTTTTTCAAGATCAGCTGTGAACCATGAAAGTGGAGCAAAAACTAGCTTATCTCAGATTGTTACAGGAATCATTATGGGCGGTGCCCTTCTTTTCTTGACTCCGCTGTTTGAGCACATACCTCAGTGTGCTTTGGCTGCGATTGTCATCTCTGCTGTAATAACTTTGGTGGATTACGAGGAAGCTATTTTTTTGTGGCGTATAGATAAGAAAGATTTTCTTCTTTGGGTGATAACTGCCGTTGCTACTTTGTTCCTGGGTATTGAGATTGGTGTCTTAATTGGGGTGGGTGTTTCACTGGCCTTTGTCATTCACGAATCTGCAAATCCACATATGGCTGTACTGGGGCGTCTTCCCGGCACCACTGTGTATAGAAATGTTCAACAGTATCCTGAAGCATATACCTATAATGGGATTGTGGTTGTTCGAATTGATGCACCAATTTATTTTGCTAACACAAGTTACATCAAAGACAGGTTACGTGAATATGAAGTAGAAGTGGATCAATCTACTGGTCGTGGACCGGACGTCGAAAGAGTCTATTTCGTGATTATAGAGATGGCACCTGTTACCTACATAGATTCAAGTGCTGTCCAAGCTCTAAAAGATTTATATCAAGAGTACAAACTCCGTGATATTCAGATTGCCATTTCCAATCCGAATCGAGACGTTCTGCTTACATTTTCAAGATCAGGCGTCGTCGAGCTTATTGGCAAGGAGTGGTTTTTTGTAAGAGTTCATGATGCCGTTCAAGTTTGTCTTCAACATGTAGAGAGCTTAAATGAAACAACCAAAACATCGGATTCATCTCCTAAAGATAAATCAAGCTTTCTCCAAAGTTTAGTGAAGTCAAGAAGTGAGGATTTCTCAGTGAGTCAGTTAGAGTCGGGCTTCCAAAAGCTTCCAAGTTTCAATGAAATTGACCCTCAATTGGAACCTTTACTATCTCGAAAGCCTTGA 2103 42.46 MEITYSSPSANSLSFSNSAMPTSGRPVKVIPLQHPTTSSSSTTGGFGAGTLVKSWTTKVKRMTWIHWMELLLPCSRWIRTYKWREYLQSDLLSGITIGIMLVPQAMSYAKLAGLRPIYGLYSGFLPLFVYAIFGSSRQLAVGPVALVSLLVSNVLGGIVNSSEELYTELAILLALMVGILECTMGLLRLGWLIRFISHSVISGFTTASAFVIGLSQVKYFLGYDVSRSSRIIPLIESIIAGADGFLWAPFIMGSAILAVLQIMKHLGKTRKHLRFLRVAGPLTAVVMGTTLAKVLNLPSISLVGDIPQGLPTFSIPKRFEHVKSLIPTAFLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANVVGSFFSAYPTTGSFSRSAVNHESGAKTSLSQIVTGIIMGGALLFLTPLFEHIPQCALAAIVISAVITLVDYEEAIFLWRIDKKDFLLWVITAVATLFLGIEIGVLIGVGVSLAFVIHESANPHMAVLGRLPGTTVYRNVQQYPEAYTYNGIVVVRIDAPIYFANTSYIKDRLREYEVEVDQSTGRGPDVERVYFVIIEMAPVTYIDSSAVQALKDLYQEYKLRDIQIAISNPNRDVLLTFSRSGVVELIGKEWFFVRVHDAVQVCLQHVESLNETTKTSDSSPKDKSSFLQSLVKSRSEDFSVSQLESGFQKLPSFNEIDPQLEPLLSRKP* 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21344738 21352728 + CsaV3_5G026240.1 Csa05g01805 530192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01805 700 PANTHER SULFATE TRANSPORTER 44 668 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa05g01805 700 Pfam Sulfate permease family 87 460 IPR011547 GO:0016021
Csa05g01805 700 TIGRFAM sulP: sulfate permease 73 630 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa05g01805 700 ProSiteProfiles STAS domain profile. 510 634 IPR002645 -
Csa05g01805 700 Pfam STAS domain 511 630 IPR002645 -
Csa05g01805 700 PANTHER SULFATE TRANSPORTER 4.1-RELATED 44 668 - -
Csa05g01805 700 SUPERFAMILY SpoIIaa-like 512 634 IPR036513 -
Csa05g01805 700 CDD STAS_SulP_like_sulfate_transporter 511 627 - -
Csa05g01805 700 MobiDBLite consensus disorder prediction 1 22 - -
Csa05g01805 700 Gene3D STAS domain 490 638 IPR036513 -
Csa05g01805 700 ProSitePatterns SLC26A transporters signature. 116 137 IPR018045 GO:0008271|GO:0008272
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01805 Csa-Chr5:21344738 Csa04g01847 Csa-Chr4:18135773 1.78E-133 dispersed
Csa05g01805 Csa-Chr5:21344738 Csa07g01694 Csa-Chr7:17436452 9.75E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01805 K18059 - csv:101202870 1313.52