Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01810 ATGCCAATCCATAAGTTTACACTCGGATCACCGGGAGAGGCGAGCCAACCGGACGCGATAAAGGCCTCATTCGCCGAGTTCTTCTCCATGATCATCTTTGTTTTCGCCGGACAAGGATCCGGATTAGCTTTTGATAAGGTAGCGGACGGCGGTGGATCTACGACAGCGTCGGGGCTGATAATTGCATCTCTGGGTCATGCTTTTGCGTTGTTTGTGGCGGTTTCGGTGGGAGCGAATATCTCCGGCGGGCATGTGAATCCGGCAGTTACATTTGGTGCGCTTGTTGGTGGAAACATATCGTTGTTTAGAAGTATAATGTATTGGATTGCTCAATTGCTTGGCTCTGTTGTTGCCTGCTTCCTTCTTAAGTTTGCCACCGGTGGAAAGGTAACGCCAGCATTTGGTCTATCATCAGGAGTTTCTGTATGGAATGGATTTATATTTGAGGCAGTGATGACATTTGGATTAGTATATACAGTATATGCAACAGCAATAGATCCAAAGAGGGAGAATTTAGATATCATTGCCCCAATTTCCATTGGTTTCATTGTTGGTGCCAACATTTTAGTTGGTGGTGCTTTTGATGGTGCTTCCATGAACCCTGCAGTCACCTTTGGCCCTGCTGTTCTCACTTGGTCTTGGACCCATCACTGGGTTTACTGGCTTGGTCCTATGACTGGTGCAGCCATTGCTGCCATTGTTTATGATACACTCTTTATCTCTGACTCCATGCATGATCCTCTTACTCAGTATAATGATTTCTAG 765 46.14 MPIHKFTLGSPGEASQPDAIKASFAEFFSMIIFVFAGQGSGLAFDKVADGGGSTTASGLIIASLGHAFALFVAVSVGANISGGHVNPAVTFGALVGGNISLFRSIMYWIAQLLGSVVACFLLKFATGGKVTPAFGLSSGVSVWNGFIFEAVMTFGLVYTVYATAIDPKRENLDIIAPISIGFIVGANILVGGAFDGASMNPAVTFGPAVLTWSWTHHWVYWLGPMTGAAIAAIVYDTLFISDSMHDPLTQYNDF* 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21392695 21394855 + CsaV3_5G026290.1 Csa05g01810 530197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01810 254 CDD MIP 21 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g01810 254 PANTHER AQUAPORIN-8 1 248 IPR034294 -
Csa05g01810 254 Pfam Major intrinsic protein 14 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g01810 254 SUPERFAMILY Aquaporin-like 16 242 IPR023271 -
Csa05g01810 254 ProSitePatterns MIP family signature. 84 92 IPR022357 -
Csa05g01810 254 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g01810 254 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g01810 254 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g01810 254 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g01810 254 PRINTS Major intrinsic protein family signature 181 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g01810 254 PRINTS Major intrinsic protein family signature 218 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g01810 254 PANTHER AQUAPORIN TIP1-1 1 248 - -
Csa05g01810 254 Gene3D Glycerol uptake facilitator protein. 5 252 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03313 Csa-Chr3:30151604 Csa05g01810 Csa-Chr5:21392695 6.96E-105 dispersed
Csa05g01810 Csa-Chr5:21392695 Csa07g02263 Csa-Chr7:21111287 3.74E-83 dispersed
Csa05g01810 Csa-Chr5:21392695 Csa06g02624 Csa-Chr6:23064934 2.81E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01810 K09873 - csv:101222909 512.301