Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01814 ATGGAGCAACCCGCCGGATTGTTGAGTCAAGCAAAGCCATATATTGCAGTCATTCTTCAGCAGTTCATCACTGCCGGAATGGTGATCATTTCCAAGTTTGCTCTCAACCAAGGGCTCAATCAACACGTTTTAGTCGTCTACCGATACACCATAGCTACCATTGTTGTCGCTCCCTTTGCTTTCGTCTTTGAGAGGAAAGTGAGACCCAAGATGACTTGGTCCATTTTTGGGAAGGTTGTGTTACTTGGACTACTAGAACCTGCACTTGACCAGAACTTGTATTATACGGGCATGAAGTACACTACGGCAACGTTTGCATCCGCTATGACTAATATGGCCCCTGGCCTAGTATTTCTCATGGCTTGGGTTGCTCGGCTCGAGAAAGTTGATGTAAGACAGTTGTCAAGCCAGGCAAAGATATTAGGGACAGTGGTGGCAGTGGGAGGGGCAATGATAATGACGGCAGTGAGAGGACCAATCTTGAATCTGCCATGGACAAATCACAACCTCCATGACCATTCCACAACTGCAGCTAACCAGCAAGATCTTCTCAAGGGTTCTCTCATGATCCTTATTGGTTGTATTTTTTGGTCTGTTTTCAATGTTCTTCAGGCAATTACAATAAAAGTATACCCAGCACAACTGTCCTTAACAGCTTGGATATGCTTCACCGGTGCCGTACAAGCCTCAGTGATAGCTTTTGCAATGGAAGGCCACAAACCTGCTGCCTGGTCATTACATTTAGATTCAACCCTCTTAGCTCCTTTGTACAGTGGAATCATGTCTTCAGGAGTTTCATATACCATCCAAGCAGCAGTAATGAAAACGAAAGGGCCAGTTTTCTCAAGTACATTTAGTCCACTGAGCATGGTTATTGTAGCAATCATTAGTTCATTCGCATTATCTGAGATATTATATTTCGGAAGGGTTATTGGAGCGGCTGTGATTATTACAGGTCTTTATTTGGTTCTTTGGGGTAAAATCAAGGATCAAGCTCTATACAAGTTAGATAGTGAGAAGATGGCCCCATCAGATCAGAAACTGACTGCCATAACCGAAAAACCTAAGACTTCAGATAAAGAACTAGGAGTTGATCTTGCTAGGATAAAAACAGTGGATGATTCAGTTTGA 1131 43.32 MEQPAGLLSQAKPYIAVILQQFITAGMVIISKFALNQGLNQHVLVVYRYTIATIVVAPFAFVFERKVRPKMTWSIFGKVVLLGLLEPALDQNLYYTGMKYTTATFASAMTNMAPGLVFLMAWVARLEKVDVRQLSSQAKILGTVVAVGGAMIMTAVRGPILNLPWTNHNLHDHSTTAANQQDLLKGSLMILIGCIFWSVFNVLQAITIKVYPAQLSLTAWICFTGAVQASVIAFAMEGHKPAAWSLHLDSTLLAPLYSGIMSSGVSYTIQAAVMKTKGPVFSSTFSPLSMVIVAIISSFALSEILYFGRVIGAAVIITGLYLVLWGKIKDQALYKLDSEKMAPSDQKLTAITEKPKTSDKELGVDLARIKTVDDSV* 377
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 21408081 21410607 - CsaV3_5G026330.1 Csa05g01814 530201
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01814 376 PANTHER WAT1-RELATED PROTEIN 9 337 IPR030184 GO:0016021|GO:0022857
Csa05g01814 376 PANTHER WAT1-RELATED PROTEIN 9 337 - -
Csa05g01814 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 328 - -
Csa05g01814 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 153 - -
Csa05g01814 376 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020|GO:0016021
Csa05g01814 376 Pfam EamA-like transporter family 13 152 IPR000620 GO:0016020|GO:0016021
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01773 Csa-Chr4:17392489 Csa05g01814 Csa-Chr5:21408081 2.31E-47 dispersed
Csa05g00425 Csa-Chr5:2818496 Csa05g01814 Csa-Chr5:21408081 1.56E-41 dispersed
Csa05g00698 Csa-Chr5:4712690 Csa05g01814 Csa-Chr5:21408081 1.49E-137 dispersed
Csa05g01814 Csa-Chr5:21408081 Csa05g01817 Csa-Chr5:21509536 2.13E-140 dispersed
Csa05g01814 Csa-Chr5:21408081 Csa05g01815 Csa-Chr5:21450427 9.74E-115 tandem
Csa04g01463 Csa-Chr4:14463477 Csa05g01814 Csa-Chr5:21408081 3.83E-138 wgd
Csa05g00696 Csa-Chr5:4642890 Csa05g01814 Csa-Chr5:21408081 6.28E-85 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01814 - - csv:101222430 730.709