Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa05g01814 | ATGGAGCAACCCGCCGGATTGTTGAGTCAAGCAAAGCCATATATTGCAGTCATTCTTCAGCAGTTCATCACTGCCGGAATGGTGATCATTTCCAAGTTTGCTCTCAACCAAGGGCTCAATCAACACGTTTTAGTCGTCTACCGATACACCATAGCTACCATTGTTGTCGCTCCCTTTGCTTTCGTCTTTGAGAGGAAAGTGAGACCCAAGATGACTTGGTCCATTTTTGGGAAGGTTGTGTTACTTGGACTACTAGAACCTGCACTTGACCAGAACTTGTATTATACGGGCATGAAGTACACTACGGCAACGTTTGCATCCGCTATGACTAATATGGCCCCTGGCCTAGTATTTCTCATGGCTTGGGTTGCTCGGCTCGAGAAAGTTGATGTAAGACAGTTGTCAAGCCAGGCAAAGATATTAGGGACAGTGGTGGCAGTGGGAGGGGCAATGATAATGACGGCAGTGAGAGGACCAATCTTGAATCTGCCATGGACAAATCACAACCTCCATGACCATTCCACAACTGCAGCTAACCAGCAAGATCTTCTCAAGGGTTCTCTCATGATCCTTATTGGTTGTATTTTTTGGTCTGTTTTCAATGTTCTTCAGGCAATTACAATAAAAGTATACCCAGCACAACTGTCCTTAACAGCTTGGATATGCTTCACCGGTGCCGTACAAGCCTCAGTGATAGCTTTTGCAATGGAAGGCCACAAACCTGCTGCCTGGTCATTACATTTAGATTCAACCCTCTTAGCTCCTTTGTACAGTGGAATCATGTCTTCAGGAGTTTCATATACCATCCAAGCAGCAGTAATGAAAACGAAAGGGCCAGTTTTCTCAAGTACATTTAGTCCACTGAGCATGGTTATTGTAGCAATCATTAGTTCATTCGCATTATCTGAGATATTATATTTCGGAAGGGTTATTGGAGCGGCTGTGATTATTACAGGTCTTTATTTGGTTCTTTGGGGTAAAATCAAGGATCAAGCTCTATACAAGTTAGATAGTGAGAAGATGGCCCCATCAGATCAGAAACTGACTGCCATAACCGAAAAACCTAAGACTTCAGATAAAGAACTAGGAGTTGATCTTGCTAGGATAAAAACAGTGGATGATTCAGTTTGA | 1131 | 43.32 | MEQPAGLLSQAKPYIAVILQQFITAGMVIISKFALNQGLNQHVLVVYRYTIATIVVAPFAFVFERKVRPKMTWSIFGKVVLLGLLEPALDQNLYYTGMKYTTATFASAMTNMAPGLVFLMAWVARLEKVDVRQLSSQAKILGTVVAVGGAMIMTAVRGPILNLPWTNHNLHDHSTTAANQQDLLKGSLMILIGCIFWSVFNVLQAITIKVYPAQLSLTAWICFTGAVQASVIAFAMEGHKPAAWSLHLDSTLLAPLYSGIMSSGVSYTIQAAVMKTKGPVFSSTFSPLSMVIVAIISSFALSEILYFGRVIGAAVIITGLYLVLWGKIKDQALYKLDSEKMAPSDQKLTAITEKPKTSDKELGVDLARIKTVDDSV* | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 21408081 | 21410607 | - | CsaV3_5G026330.1 | Csa05g01814 | 530201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa05g01814 | 376 | PANTHER | WAT1-RELATED PROTEIN | 9 | 337 | IPR030184 | GO:0016021|GO:0022857 | |
| Csa05g01814 | 376 | PANTHER | WAT1-RELATED PROTEIN | 9 | 337 | - | - | |
| Csa05g01814 | 376 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 247 | 328 | - | - | |
| Csa05g01814 | 376 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 47 | 153 | - | - | |
| Csa05g01814 | 376 | Pfam | EamA-like transporter family | 185 | 324 | IPR000620 | GO:0016020|GO:0016021 | |
| Csa05g01814 | 376 | Pfam | EamA-like transporter family | 13 | 152 | IPR000620 | GO:0016020|GO:0016021 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa04g01773 | Csa-Chr4:17392489 | Csa05g01814 | Csa-Chr5:21408081 | 2.31E-47 | dispersed | |
| Csa05g00425 | Csa-Chr5:2818496 | Csa05g01814 | Csa-Chr5:21408081 | 1.56E-41 | dispersed | |
| Csa05g00698 | Csa-Chr5:4712690 | Csa05g01814 | Csa-Chr5:21408081 | 1.49E-137 | dispersed | |
| Csa05g01814 | Csa-Chr5:21408081 | Csa05g01817 | Csa-Chr5:21509536 | 2.13E-140 | dispersed | |
| Csa05g01814 | Csa-Chr5:21408081 | Csa05g01815 | Csa-Chr5:21450427 | 9.74E-115 | tandem | |
| Csa04g01463 | Csa-Chr4:14463477 | Csa05g01814 | Csa-Chr5:21408081 | 3.83E-138 | wgd | |
| Csa05g00696 | Csa-Chr5:4642890 | Csa05g01814 | Csa-Chr5:21408081 | 6.28E-85 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa05g01814 | - | - | csv:101222430 | 730.709 |