Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g01817 | ATGGAGAAGATAGGTAAAACGTTTGAGAAGGCAAAGCCATATTTGGGAGCAATCGCATTAAGATTTGCATCAGCAGGAATGTCTATTATTTCTAAGGCTGCTTTAAACCAAGGAATGAACCAACTTGTTACCATTGTTTATCGTTATTCTATTGGTGCCATTGTTGTTGCTCCTTTTGCTTTCGTTTTGGATAGGAAAATAAGACCAAAGATGACTCTCCCCATCTTTGCCAAGATTCTTCTCCTCGGCTTACTCGAGCCAGTAATAGCCCAAAGCTTGATTTACTCTGGCACTAAATACACAACAGCAACTTTTGCAACAGCCATGTGCAATATTCTTCCTGCCTTTGCATTTCTAATGGCTTGGATTTGTAGAATGGAGAAGGTGAATATTAGAAGCTTAAGAAGCCAAGCAAAGATTTTAGGGACTTTAGTAACAGTTGGAGGAGCTATGATGATGACACTTTTAAAAGGACCTTTATTGAGTTTGCCTTGGACCAACCAAAATAATTTAAATCCTCATTCTTATTCTACTCTTCCAAATAAACAACAACCTGTTAAAGCTGCCATTGTTATCACCATTTCAAGTATTTGCTCCTCAGCTTTCACCATTCTTCTGGCACATACAATAAGAACATATCCAGCTGAGCTCACATTAACAACATTCATATGCTTGGCTGGAGCTGTTGAAAGTACTATTTTAGCCTTAGCATTTGAATGGGACAATCCATCTGCATGGGTTTTACATGCAGATTCCATACTCTTAGCTGCCCTCTATGGTGGCATAATATCGTCCGGGATTGCTTATTATCTTCAAGGAGTGGTGGTGAAGTTAAAAGGACCCGTGTTTGTAACTGCATTCAATCCTCTTAGTATGGTTATAGTTGCTATAATTAGTTCGTTCATATTTGCCGAGACATTGCGCTTAGGAAGGGTTGTTGGTGCAGCTGTGATAATTATAGGCCTTTACTTGGTATTGTGGGGCAAAAGCAAAGATAAATTTCAATTAAAAAATGGAAATAATGATGATGATGATGATAATAATGAAGAATTGCCAACTTCAATCCAAAACTCAAGAACCACAAAACAGCAGTTGAAGCCTTTAGATTCAACAATAAGCCATTAA | 1125 | 37.96 | MEKIGKTFEKAKPYLGAIALRFASAGMSIISKAALNQGMNQLVTIVYRYSIGAIVVAPFAFVLDRKIRPKMTLPIFAKILLLGLLEPVIAQSLIYSGTKYTTATFATAMCNILPAFAFLMAWICRMEKVNIRSLRSQAKILGTLVTVGGAMMMTLLKGPLLSLPWTNQNNLNPHSYSTLPNKQQPVKAAIVITISSICSSAFTILLAHTIRTYPAELTLTTFICLAGAVESTILALAFEWDNPSAWVLHADSILLAALYGGIISSGIAYYLQGVVVKLKGPVFVTAFNPLSMVIVAIISSFIFAETLRLGRVVGAAVIIIGLYLVLWGKSKDKFQLKNGNNDDDDDNNEELPTSIQNSRTTKQQLKPLDSTISH* | 375 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 21509536 | 21513872 | - | CsaV3_5G026360.1 | Csa05g01817 | 530204 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g01817 | 374 | MobiDBLite | consensus disorder prediction | 338 | 374 | - | - | |
Csa05g01817 | 374 | PANTHER | WAT1-RELATED PROTEIN | 9 | 341 | - | - | |
Csa05g01817 | 374 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 47 | 156 | - | - | |
Csa05g01817 | 374 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 255 | 331 | - | - | |
Csa05g01817 | 374 | MobiDBLite | consensus disorder prediction | 351 | 374 | - | - | |
Csa05g01817 | 374 | Pfam | EamA-like transporter family | 188 | 326 | IPR000620 | GO:0016020|GO:0016021 | |
Csa05g01817 | 374 | Pfam | EamA-like transporter family | 13 | 153 | IPR000620 | GO:0016020|GO:0016021 | |
Csa05g01817 | 374 | PANTHER | WAT1-RELATED PROTEIN | 9 | 341 | IPR030184 | GO:0016021|GO:0022857 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g00696 | Csa-Chr5:4642890 | Csa05g01817 | Csa-Chr5:21509536 | 1.80E-81 | dispersed | |
Csa05g01814 | Csa-Chr5:21408081 | Csa05g01817 | Csa-Chr5:21509536 | 2.13E-140 | dispersed | |
Csa05g01815 | Csa-Chr5:21450427 | Csa05g01817 | Csa-Chr5:21509536 | 8.80E-115 | dispersed | |
Csa05g01817 | Csa-Chr5:21509536 | Csa03g03689 | Csa-Chr3:32827816 | 3.58E-108 | dispersed | |
Csa05g01816 | Csa-Chr5:21474441 | Csa05g01817 | Csa-Chr5:21509536 | 2.69E-114 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g01817 | - | - | csv:101208640 | 715.687 |