Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01817 ATGGAGAAGATAGGTAAAACGTTTGAGAAGGCAAAGCCATATTTGGGAGCAATCGCATTAAGATTTGCATCAGCAGGAATGTCTATTATTTCTAAGGCTGCTTTAAACCAAGGAATGAACCAACTTGTTACCATTGTTTATCGTTATTCTATTGGTGCCATTGTTGTTGCTCCTTTTGCTTTCGTTTTGGATAGGAAAATAAGACCAAAGATGACTCTCCCCATCTTTGCCAAGATTCTTCTCCTCGGCTTACTCGAGCCAGTAATAGCCCAAAGCTTGATTTACTCTGGCACTAAATACACAACAGCAACTTTTGCAACAGCCATGTGCAATATTCTTCCTGCCTTTGCATTTCTAATGGCTTGGATTTGTAGAATGGAGAAGGTGAATATTAGAAGCTTAAGAAGCCAAGCAAAGATTTTAGGGACTTTAGTAACAGTTGGAGGAGCTATGATGATGACACTTTTAAAAGGACCTTTATTGAGTTTGCCTTGGACCAACCAAAATAATTTAAATCCTCATTCTTATTCTACTCTTCCAAATAAACAACAACCTGTTAAAGCTGCCATTGTTATCACCATTTCAAGTATTTGCTCCTCAGCTTTCACCATTCTTCTGGCACATACAATAAGAACATATCCAGCTGAGCTCACATTAACAACATTCATATGCTTGGCTGGAGCTGTTGAAAGTACTATTTTAGCCTTAGCATTTGAATGGGACAATCCATCTGCATGGGTTTTACATGCAGATTCCATACTCTTAGCTGCCCTCTATGGTGGCATAATATCGTCCGGGATTGCTTATTATCTTCAAGGAGTGGTGGTGAAGTTAAAAGGACCCGTGTTTGTAACTGCATTCAATCCTCTTAGTATGGTTATAGTTGCTATAATTAGTTCGTTCATATTTGCCGAGACATTGCGCTTAGGAAGGGTTGTTGGTGCAGCTGTGATAATTATAGGCCTTTACTTGGTATTGTGGGGCAAAAGCAAAGATAAATTTCAATTAAAAAATGGAAATAATGATGATGATGATGATAATAATGAAGAATTGCCAACTTCAATCCAAAACTCAAGAACCACAAAACAGCAGTTGAAGCCTTTAGATTCAACAATAAGCCATTAA 1125 37.96 MEKIGKTFEKAKPYLGAIALRFASAGMSIISKAALNQGMNQLVTIVYRYSIGAIVVAPFAFVLDRKIRPKMTLPIFAKILLLGLLEPVIAQSLIYSGTKYTTATFATAMCNILPAFAFLMAWICRMEKVNIRSLRSQAKILGTLVTVGGAMMMTLLKGPLLSLPWTNQNNLNPHSYSTLPNKQQPVKAAIVITISSICSSAFTILLAHTIRTYPAELTLTTFICLAGAVESTILALAFEWDNPSAWVLHADSILLAALYGGIISSGIAYYLQGVVVKLKGPVFVTAFNPLSMVIVAIISSFIFAETLRLGRVVGAAVIIIGLYLVLWGKSKDKFQLKNGNNDDDDDNNEELPTSIQNSRTTKQQLKPLDSTISH* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21509536 21513872 - CsaV3_5G026360.1 Csa05g01817 530204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01817 374 MobiDBLite consensus disorder prediction 338 374 - -
Csa05g01817 374 PANTHER WAT1-RELATED PROTEIN 9 341 - -
Csa05g01817 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 156 - -
Csa05g01817 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 255 331 - -
Csa05g01817 374 MobiDBLite consensus disorder prediction 351 374 - -
Csa05g01817 374 Pfam EamA-like transporter family 188 326 IPR000620 GO:0016020|GO:0016021
Csa05g01817 374 Pfam EamA-like transporter family 13 153 IPR000620 GO:0016020|GO:0016021
Csa05g01817 374 PANTHER WAT1-RELATED PROTEIN 9 341 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00696 Csa-Chr5:4642890 Csa05g01817 Csa-Chr5:21509536 1.80E-81 dispersed
Csa05g01814 Csa-Chr5:21408081 Csa05g01817 Csa-Chr5:21509536 2.13E-140 dispersed
Csa05g01815 Csa-Chr5:21450427 Csa05g01817 Csa-Chr5:21509536 8.80E-115 dispersed
Csa05g01817 Csa-Chr5:21509536 Csa03g03689 Csa-Chr3:32827816 3.58E-108 dispersed
Csa05g01816 Csa-Chr5:21474441 Csa05g01817 Csa-Chr5:21509536 2.69E-114 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01817 - - csv:101208640 715.687