Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01827 ATGAGGCTGAGGGAAATTTCTCATCGGATTGTTAATGAGCGTGATTCGAGGGTGACAAGAAATGATGTGATTAGTGCTATGTGCTTTTACATCAACAAACTGGCAGGTAAGTGCAAGGATATTGTTGACATTATGAATAAGATGTCCTATAAAGACTTGGATGACCAGCAGATGCAACAGCTATTGAGGTTGAAAGAGCTTCTTTGTGGGATTGTTGATGGAGCCAAAGATGTGGAAACTGAACCTTCCCGTATTGTTGAACAGGGCATGGTGAGTGATATCTGGACGACAGAGAGTTTGGAAGTGGAGCCAATTGATTCCTGCAATGATGACATACCACTTGGAGAGACACAAATTGTAGCGATTGAAGATGAACAGGCAGTAGCTGAAGCTAGGCTCAAGAATCAATATTGTGACATGTCGCATGTTAAACACTCTGTCAGTTGGCCTCCAAATGGTAGTTTAACCTTAGAGTGGGTTGTACAGATGATGAAAATTCTTGAACTGTCTTCAAGAAACTACTCTCCAGCAGAATTTCAACTTATAATGCCAGTTTCTGTGGTAGATGCAATACTTGATGTAGCTGAAAGTATCCTTCACAAGGAACCAAACTGCCTGGAAATTGACTGCCACGGAGAAGTTTCAAAAGTGGTTATAGTTGGGGACATTCATGGACATTATCATGACTTACTTCATCTATTCGAACTTGCTAATTTGCCATCTGAAAGCCAGTATTACGTTTTTAATGGTAATTATGTGGACAGAGGAGCATGGGGACTTGAGGTGTTTTTGGTTTTATTGGCGTGGAAGATCTTGATGCCTGATAGAGTATATCTGCTCCGTGGAAATCATGAAACGAGAATTTGTACATCATCCTACGGTTTTGAGAAAGAAGTAAGGACAAAATATGGCGAGCAAGGTGAAAAAGTATATCACAGGTGCTTGGAAACATTTAAGGAACTTCCTTTGGCTGCAATTATTGCTGGAAAAGTATATACAACACATGGAGGGTTATTTCGTAAGCCATGCAATCCTGATCTGCAGAATGACAAGGAGATGAAGACAGGAAAGCTGGAGATTGGATCCTTGCAAGATTTATCTAAGCTTGAAAGGTTTTTTGTTGATATTCCAACTAAAGACGAAGATCCAAATATAATTTTGGCAGATGTATTGTGGTCAGATCCTTCCAAGGTAGATGGTTTAAGGGAAAATCAAGCCAGAGGAGCAGGTCTATCATGGGGTCCTGATTTTACAGAAGCATTCTTAAAGCTGTCCAATTTAAAGTTGATCATTAGGTCACATGAAGGCCCAGATTCAAGGGATGGTAAGATAGATTTTGATGATATGATAATGGGTTATAGCACAGATCACGACATCAAATCAGGGAAATTATATACTCTATTTAGCGCTCCAGATTTCCCTCAGTTTGGTCAGAAGAGTTACAATAATGAGGGAGCATATGCTACTTTGAAGCATCCGGATTTTGAAACTCCATCCTTCCATACATTTAAAGCTGTAGATAAACCGAAGATAGACGTTTGCTATTTTGGTTGTGAAGGACATGATTTAGATTTAGATTTGACATTAATGGCTCTAGCTGACGCTGTCTCTTCTAACAACTCTAGTCCTATTGAGATTCATTCAGGGGTTGATTTTGAGGCATTAGGCATATTAAACCCACCTTCTTGGAGCATTACATTGACAGATGATGCTACAGGTACCCAAAATGTTCCGATTCCAAAGGCTCCTGTGGTAGAAGGGCTGCCTCTGCCGCCTAGCATAGAGGAACCTCACAAGGCTGCTTATGAATACTTCTTGGAGCTCATTGCAGGACTGAAATTTATGCTCCAAACAACAGAAAATAAGAACAAAATCCATGTTTCTCATCGAAAGAGGAAGAAGTGCAATTAG 1911 40.14 MRLREISHRIVNERDSRVTRNDVISAMCFYINKLAGKCKDIVDIMNKMSYKDLDDQQMQQLLRLKELLCGIVDGAKDVETEPSRIVEQGMVSDIWTTESLEVEPIDSCNDDIPLGETQIVAIEDEQAVAEARLKNQYCDMSHVKHSVSWPPNGSLTLEWVVQMMKILELSSRNYSPAEFQLIMPVSVVDAILDVAESILHKEPNCLEIDCHGEVSKVVIVGDIHGHYHDLLHLFELANLPSESQYYVFNGNYVDRGAWGLEVFLVLLAWKILMPDRVYLLRGNHETRICTSSYGFEKEVRTKYGEQGEKVYHRCLETFKELPLAAIIAGKVYTTHGGLFRKPCNPDLQNDKEMKTGKLEIGSLQDLSKLERFFVDIPTKDEDPNIILADVLWSDPSKVDGLRENQARGAGLSWGPDFTEAFLKLSNLKLIIRSHEGPDSRDGKIDFDDMIMGYSTDHDIKSGKLYTLFSAPDFPQFGQKSYNNEGAYATLKHPDFETPSFHTFKAVDKPKIDVCYFGCEGHDLDLDLTLMALADAVSSNNSSPIEIHSGVDFEALGILNPPSWSITLTDDATGTQNVPIPKAPVVEGLPLPPSIEEPHKAAYEYFLELIAGLKFMLQTTENKNKIHVSHRKRKKCN* 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21615489 21624466 - CsaV3_5G026460.1 Csa05g01827 530214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01827 636 SUPERFAMILY Metallo-dependent phosphatases 171 511 IPR029052 -
Csa05g01827 636 PRINTS Serine/threonine phosphatase family signature 316 342 IPR006186 GO:0016787
Csa05g01827 636 PRINTS Serine/threonine phosphatase family signature 463 479 IPR006186 GO:0016787
Csa05g01827 636 PRINTS Serine/threonine phosphatase family signature 279 303 IPR006186 GO:0016787
Csa05g01827 636 PRINTS Serine/threonine phosphatase family signature 369 396 IPR006186 GO:0016787
Csa05g01827 636 PRINTS Serine/threonine phosphatase family signature 216 243 IPR006186 GO:0016787
Csa05g01827 636 PRINTS Serine/threonine phosphatase family signature 246 273 IPR006186 GO:0016787
Csa05g01827 636 ProSitePatterns Serine/threonine specific protein phosphatases signature. 280 285 IPR006186 GO:0016787
Csa05g01827 636 Gene3D - 117 519 IPR029052 -
Csa05g01827 636 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 1 622 - -
Csa05g01827 636 SMART pp2a_7 183 507 IPR006186 GO:0016787
Csa05g01827 636 Pfam Calcineurin-like phosphoesterase 216 437 IPR004843 GO:0016787
Csa05g01827 636 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 622 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00011 Csa-Chr3:237003 Csa05g01827 Csa-Chr5:21615489 3.28E-36 dispersed
Csa03g00012 Csa-Chr3:245611 Csa05g01827 Csa-Chr5:21615489 2.40E-81 dispersed
Csa05g01827 Csa-Chr5:21615489 Csa06g01370 Csa-Chr6:11645258 1.77E-51 dispersed
Csa05g01827 Csa-Chr5:21615489 Csa06g02410 Csa-Chr6:21518781 1.03E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01827 K04460 - csv:101211172 1282.7