Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01833 ATGGCGGGAAAGGGAGAAGGTCCGGCCATCGGTATCGATCTCGGTACCACTTACTCTTGTGTTGGAGTTTGGCAACATGATCGTGTTGAGATTATTGCCAATGATCAAGGTAATCGGACCACGCCCTCTTATGTTGCTTTCACTGATACTGAACGTCTCATCGGTGATGCTGCCAAGAATCAAGTCGCTATGAATCCTCTCAACACCGTCTTTGATGCGAAGAGGTTGATTGGTAGGAGATTCTCCGATCCTTCGGTTCAGAGCGATATGAAATTATGGCCATTCAAGGTGATCCCCGGTCCAGGGGACAAGCCTATGATCGTCGTCAATTACAAAGGAGAAGAGAAGCAATTTGCAGCTGAGGAAATCTCCTCCATGGTCCTTACTAAAATGCGTGAGATTGCAGAAGCTTACCTTGGTTCCTCCGTGAAGAACGCCGTTGTCACCGTTCCTGCTTACTTCAATGACTCTCAACGTCAAGCCACCAAGGACGCTGGAGTCATCGCCGGTCTTAATGTTATGCGTATCATCAACGAGCCTACAGCTGCAGCCATTGCTTATGGACTCGACAAAAAGGCGACCAGCGTTGGCGAGAAGAATGTTCTGATTTTCGATCTGGGTGGAGGAACATTTGATGTCTCTCTCCTCACAATCGAGGAAGGAATTTTCGAGGTGAAGGCAACCGCCGGTGACACCCATCTCGGCGGTGAGGATTTCGACAACAGATTAGTTAACCATTTCGTTCAGGAATTCAAGAGGAAGCATAAGAAAGACATCAGTGGAAATCCAAGGGCCCTCAGGAGATTGAGAACTGCTTGTGAAAGAGCCAAGAGAACCCTTTCATCTACTGCCCAAACAACAATCGAAATCGATTCTTTATACGAAGGAATCGATTTCTACACAACAATTACTCGTGCTAGATTCGAAGAACTCAACATGGATCTCTTCCGAAAGTGTATGGAGCCAGTTGAGAAATGTTTGAGAGATGCAAAGATGGACAAAAGCTCCGTCCATGATGTTGTTCTTGTAGGTGGATCTACAAGAATCCCAAAGGTACAACAGCTATTGCAAGATTTCTTCAATGGCAAGGAGCTTTGCAAGAGTATCAACCCTGATGAGGCAGTTGCTTATGGAGCTGCTGTTCAAGCCGCCATCTTGAGTGGTGAAGGAAACGAGAAAGTGCAAGACCTTCTTCTTTTGGATGTTACTCCTCTATCCCTTGGTTTAGAAACTGCAGGAGGTGTAATGACGGTTTTGATTCCGAGGAACACGACGATCCCGACGAAGAAAGAGCAAGTTTTCTCTACCTACTCAGACAACCAACCTGGTGTTCTTATCCAAGTCTACGAGGGAGAAAGAACAAGAACAAAAGACAACAACTTGTTGGGTAAGTTTGAACTTTCAGGCATTCCTCCAGCTCCTAGAGGCGTTCCTCAAATCACTGTTTGCTTCGACATCGACGCAAACGGTATCCTTAACGTATCGGCCGAGGATAAAACCACCGGACAAAAGAACAAGATCACAATTACCAACGACAAAGGAAGGTTGTCGAAGGAAGAGATAGAGAAACTGGTTCAAGAAGCAGAGAAATTCAAGGCAGAGGACGAAGAACACAAGAAGAAAGTTGAATCCAAGAATGCTTTGGAAAACTATGCTTACAATATGAGGAACACAATCAGAGATGAAAAGATTGGCGGTAAGCTTGCTCCGGCTGATAAGAAGAAGATTGAAGATGCAGTTGAACAAGCAATTCAGTGGCTAGATAGCAATCAGCTGGCTGAATCGGATGAATTTGAAGACAAGATGAAGGAACTGGAGTCAATTTGCAACCCCATCATAGCCAAGATGTATCAGGGCGGTGCCGATATGGGCGGTGCTGCCATGAATGATGATGCTCCTCCTTCTGGTGGTAGTGGCGCTGGTCCTAAGATTGAAGAAGTGGATTAA 1947 45.76 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFSDPSVQSDMKLWPFKVIPGPGDKPMIVVNYKGEEKQFAAEEISSMVLTKMREIAEAYLGSSVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKLVQEAEKFKAEDEEHKKKVESKNALENYAYNMRNTIRDEKIGGKLAPADKKKIEDAVEQAIQWLDSNQLAESDEFEDKMKELESICNPIIAKMYQGGADMGGAAMNDDAPPSGGSGAGPKIEEVD* 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21670377 21673247 - CsaV3_5G026520.1 Csa05g01833 530220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01833 648 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Csa05g01833 648 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Csa05g01833 648 MobiDBLite consensus disorder prediction 621 648 - -
Csa05g01833 648 Gene3D - 546 619 IPR029048 -
Csa05g01833 648 Gene3D - 71 126 - -
Csa05g01833 648 Gene3D - 10 384 - -
Csa05g01833 648 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Csa05g01833 648 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Csa05g01833 648 Gene3D Actin; Chain A, domain 4 235 318 - -
Csa05g01833 648 PANTHER HEAT SHOCK PROTEIN 70KDA 1 628 IPR013126 GO:0005524|GO:0140662
Csa05g01833 648 PRINTS 70kDa heat shock protein signature 8 21 - -
Csa05g01833 648 PRINTS 70kDa heat shock protein signature 36 48 - -
Csa05g01833 648 PRINTS 70kDa heat shock protein signature 58 66 - -
Csa05g01833 648 PRINTS 70kDa heat shock protein signature 146 166 - -
Csa05g01833 648 PRINTS 70kDa heat shock protein signature 209 219 - -
Csa05g01833 648 PRINTS 70kDa heat shock protein signature 337 353 - -
Csa05g01833 648 PRINTS 70kDa heat shock protein signature 369 389 - -
Csa05g01833 648 PRINTS 70kDa heat shock protein signature 396 415 - -
Csa05g01833 648 PRINTS 70kDa heat shock protein signature 477 493 - -
Csa05g01833 648 Gene3D - 192 366 - -
Csa05g01833 648 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Csa05g01833 648 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Csa05g01833 648 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Csa05g01833 648 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 623 IPR029048 -
Csa05g01833 648 Coils Coil 514 541 - -
Csa05g01833 648 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 545 IPR029047 -
Csa05g01833 648 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 628 - -
Csa05g01833 648 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01826 Csa-Chr5:21611631 Csa05g01833 Csa-Chr5:21670377 0 proximal
Csa02g00701 Csa-Chr2:5673429 Csa05g01833 Csa-Chr5:21670377 0 transposed
Csa02g00905 Csa-Chr2:8444104 Csa05g01833 Csa-Chr5:21670377 0 transposed
Csa03g01338 Csa-Chr3:10118261 Csa05g01833 Csa-Chr5:21670377 4.84E-92 transposed
Csa03g02245 Csa-Chr3:19766476 Csa05g01833 Csa-Chr5:21670377 1.17E-83 transposed
Csa04g01169 Csa-Chr4:10111427 Csa05g01833 Csa-Chr5:21670377 0 transposed
Csa05g00196 Csa-Chr5:1166017 Csa05g01833 Csa-Chr5:21670377 0 transposed
Csa07g01387 Csa-Chr7:14011638 Csa05g01833 Csa-Chr5:21670377 1.19E-180 transposed
Csa07g02226 Csa-Chr7:20922786 Csa05g01833 Csa-Chr5:21670377 4.22E-89 transposed
Csa04g01476 Csa-Chr4:14570618 Csa05g01833 Csa-Chr5:21670377 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01833 K03283 - csv:101211905 1249.57