Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01834 ATGGTTTTCTCTTCAGTTCCTGTGTTCCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAAGTAAGTGGTTGTGAGACCAATAATGCTCAACACCTTCCACCTCCGGCACCGTCAGCTAATAGTGGCGGTGGTGGAGGTAGCGGAGGAGGCGGTGGAGGTGGACCTGGATCAGTTAGACCAGGGTCAATGACGGATCGAGCTAGGTTAGCAAAGATACCGCAACCAGAAGCAGGATTAAAATGTCCTAGATGTGAATCAACAAACACGAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACGTGCCGCCGGTATTGGACGAGAGGTGGAGCGATGAGGAACGTACCAGTCGGAGGCGGGTGTCGGCGGTCTAGTAAGAGAAGTAGCAAAGGAGGAAGCAATAATAGGTCAAAATCACCAGGAGGATCAAGCACTTCAACAAGCACAGTATCATCAAATAGTTGTACAACAGATATAATTAGCCCACAATTAGCTCATCATCACCATCCTCCTCCAACAACCCATTTGCCCTTTTTCTCTCAAAATTTACACCATCTTAGTGAATTTGGAAACCTTGGTTTAAATTTTGAAGCCCTTCAAATCCCTAATTCACTCCCATCATCAGCTGAATCATCCTCAGTTTTATCAAGTGGAATTATTTCAGATCATCATCCATGGAAAATACCCTTTTTTGGAAATTTACATCAACAAAATGGGATTTATTCAAACTTCATTGGCGATCAAGATCATCATCATCAACAACAAACAGCTGATTTCACAAATTATCAAAGGTTGTCAAAGCCATTGTTGGAAAGTGGATTCAATCACCAATTGGAGAATATTAATATCAATAACAATAACAATAGTATGAAAATCTTGGAGGATACACAAGGGATTAACAATTTGTCAAGAAATTTTCTTGGAATTCAGCCAAATGAAGATCAATTCTGGAATTCTACAACAACAACGACAACAGCTGGAAATATTGGATGGAGTAGTGATCCAATTTCAGATCATTTCAACACAACTTCTTCCACTACTCATCTTTTGTAA 1086 41.07 MVFSSVPVFLDPPNWPSQQPNQLQVSGCETNNAQHLPPPAPSANSGGGGGSGGGGGGGPGSVRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNNRSKSPGGSSTSTSTVSSNSCTTDIISPQLAHHHHPPPTTHLPFFSQNLHHLSEFGNLGLNFEALQIPNSLPSSAESSSVLSSGIISDHHPWKIPFFGNLHQQNGIYSNFIGDQDHHHQQQTADFTNYQRLSKPLLESGFNHQLENININNNNNSMKILEDTQGINNLSRNFLGIQPNEDQFWNSTTTTTTAGNIGWSSDPISDHFNTTSSTTHLL* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21688794 21690953 + CsaV3_5G026530.1 Csa05g01834 530221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01834 361 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 335 - -
Csa05g01834 361 Pfam Dof domain, zinc finger 83 137 IPR003851 GO:0003677|GO:0006355
Csa05g01834 361 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 335 IPR045174 GO:0003700|GO:0006355
Csa05g01834 361 MobiDBLite consensus disorder prediction 137 165 - -
Csa05g01834 361 ProSiteProfiles Zinc finger Dof-type profile. 83 137 IPR003851 GO:0003677|GO:0006355
Csa05g01834 361 MobiDBLite consensus disorder prediction 124 165 - -
Csa05g01834 361 MobiDBLite consensus disorder prediction 29 67 - -
Csa05g01834 361 ProSitePatterns Zinc finger Dof-type signature. 85 121 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01834 - - - csv:101212561 625.165
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03190 Csa-Chr3:29464183 Csa05g01834 Csa-Chr5:21688794 4.13E-48 dispersed
Csa05g01834 Csa-Chr5:21688794 Csa06g01499 Csa-Chr6:12669120 5.28E-45 dispersed
Csa04g01478 Csa-Chr4:14585987 Csa05g01834 Csa-Chr5:21688794 3.66E-41 wgd
Csa05g00707 Csa-Chr5:4789391 Csa05g01834 Csa-Chr5:21688794 1.96E-51 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g02327 CCT 22 149 C2C2-Dof Transcription Factor Family AT1G29160 66.7 1.2e-42 169.9
Csa06g03703 CCT 6 164 C2C2-Dof Transcription Factor Family AT1G29160 51.4 2.1e-39 159.1
Csa05g00179 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.2e-42 168.7
Csa01g02327 CCT 9 149 C2C2-Dof Transcription Factor Family AT2G34140 55.8 3.1e-40 161.8
Csa06g03703 CCT 6 172 C2C2-Dof Transcription Factor Family AT2G34140 50.3 7.6e-39 157.1
Csa03g03190 CCT,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 66.7 9.2e-41 164.5
Csa05g00707 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 63.1 1.1e-38 157.5
Csa05g01834 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.5 2.8e-37 152.9
Csa01g02399 CCT,ECH 65 139 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.7e-37 152.1
Csa05g00179 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 79.8 7.1e-44 174.9
Csa01g02399 CCT,ECH 1 139 C2C2-Dof Transcription Factor Family AT5G02460 57.1 9.4e-40 161.4
Csa04g01478 CCT,ECH 42 122 C2C2-Dof Transcription Factor Family AT5G02460 82.7 1.2e-37 154.5
Csa03g03190 CCT,ECH 46 132 C2C2-Dof Transcription Factor Family AT3G55370 78.2 2.4e-37 153.3
Csa04g01478 CCT,ECH 43 176 C2C2-Dof Transcription Factor Family AT3G55370 57.9 5.3e-37 152.1
Csa01g00332 CCT 28 339 C2C2-Dof Transcription Factor Family AT5G60850 51.4 5.7e-45 178.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31767 PF02701 zf-Dof 4.60E-31 No_clan Csa TF