Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01834 ATGGTTTTCTCTTCAGTTCCTGTGTTCCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAAGTAAGTGGTTGTGAGACCAATAATGCTCAACACCTTCCACCTCCGGCACCGTCAGCTAATAGTGGCGGTGGTGGAGGTAGCGGAGGAGGCGGTGGAGGTGGACCTGGATCAGTTAGACCAGGGTCAATGACGGATCGAGCTAGGTTAGCAAAGATACCGCAACCAGAAGCAGGATTAAAATGTCCTAGATGTGAATCAACAAACACGAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACGTGCCGCCGGTATTGGACGAGAGGTGGAGCGATGAGGAACGTACCAGTCGGAGGCGGGTGTCGGCGGTCTAGTAAGAGAAGTAGCAAAGGAGGAAGCAATAATAGGTCAAAATCACCAGGAGGATCAAGCACTTCAACAAGCACAGTATCATCAAATAGTTGTACAACAGATATAATTAGCCCACAATTAGCTCATCATCACCATCCTCCTCCAACAACCCATTTGCCCTTTTTCTCTCAAAATTTACACCATCTTAGTGAATTTGGAAACCTTGGTTTAAATTTTGAAGCCCTTCAAATCCCTAATTCACTCCCATCATCAGCTGAATCATCCTCAGTTTTATCAAGTGGAATTATTTCAGATCATCATCCATGGAAAATACCCTTTTTTGGAAATTTACATCAACAAAATGGGATTTATTCAAACTTCATTGGCGATCAAGATCATCATCATCAACAACAAACAGCTGATTTCACAAATTATCAAAGGTTGTCAAAGCCATTGTTGGAAAGTGGATTCAATCACCAATTGGAGAATATTAATATCAATAACAATAACAATAGTATGAAAATCTTGGAGGATACACAAGGGATTAACAATTTGTCAAGAAATTTTCTTGGAATTCAGCCAAATGAAGATCAATTCTGGAATTCTACAACAACAACGACAACAGCTGGAAATATTGGATGGAGTAGTGATCCAATTTCAGATCATTTCAACACAACTTCTTCCACTACTCATCTTTTGTAA 1086 41.07 MVFSSVPVFLDPPNWPSQQPNQLQVSGCETNNAQHLPPPAPSANSGGGGGSGGGGGGGPGSVRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNNRSKSPGGSSTSTSTVSSNSCTTDIISPQLAHHHHPPPTTHLPFFSQNLHHLSEFGNLGLNFEALQIPNSLPSSAESSSVLSSGIISDHHPWKIPFFGNLHQQNGIYSNFIGDQDHHHQQQTADFTNYQRLSKPLLESGFNHQLENININNNNNSMKILEDTQGINNLSRNFLGIQPNEDQFWNSTTTTTTAGNIGWSSDPISDHFNTTSSTTHLL* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21688794 21690953 + CsaV3_5G026530.1 Csa05g01834 530221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01834 361 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 335 - -
Csa05g01834 361 Pfam Dof domain, zinc finger 83 137 IPR003851 GO:0003677|GO:0006355
Csa05g01834 361 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 335 IPR045174 GO:0003700|GO:0006355
Csa05g01834 361 MobiDBLite consensus disorder prediction 137 165 - -
Csa05g01834 361 ProSiteProfiles Zinc finger Dof-type profile. 83 137 IPR003851 GO:0003677|GO:0006355
Csa05g01834 361 MobiDBLite consensus disorder prediction 124 165 - -
Csa05g01834 361 MobiDBLite consensus disorder prediction 29 67 - -
Csa05g01834 361 ProSitePatterns Zinc finger Dof-type signature. 85 121 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03190 Csa-Chr3:29464183 Csa05g01834 Csa-Chr5:21688794 4.13E-48 dispersed
Csa05g01834 Csa-Chr5:21688794 Csa06g01499 Csa-Chr6:12669120 5.28E-45 dispersed
Csa04g01478 Csa-Chr4:14585987 Csa05g01834 Csa-Chr5:21688794 3.66E-41 wgd
Csa05g00707 Csa-Chr5:4789391 Csa05g01834 Csa-Chr5:21688794 1.96E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31767 PF02701 zf-Dof 4.60E-31 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01834 - - csv:101212561 625.165