Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01846 ATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGCGATGAAGCTCAATCCAAGCGTGGTATTTTGACTTTGAAATACCCAATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATATGGCATCACACGTTCTATAACGAGCTCCGTGTTGCACCGGAGGAGCATCCTGTACTCCTAACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTCAACACTCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTATATGCCAGTGGCCGAACGACTGGCATTGTGATGGACTCTGGTGATGGTGTCAGTCATACAGTCCCCATATATGAGGGCTATGCTCTTCCACATGCCATTCTTCGACTCGATCTAGCTGGCCGTGATCTAACTGATAACTTGATGAAAATCCTCACGGAGCGTGGTTATTCATTTACCACCACAGCAGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGCTTTCATATATCGCACTTGACTACGAGCAGGAACTTGAAACATCCAAAACCAGTTCATCTGTTGAAAAGAGCTATGAGTTGCCTGATGGACAGGTCATCACAATTGGTGCTGAGCGTTTTAGATGCCCAGAAGTTCTTTTCCAGCCATCCATGATCGGAATGGAAGCTGCAGGTATTCATGAAACCACGTATAATTCCATCATGAAGTGCGACGTGGATATCAGGAAGGATCTGTATGGCAACATTGTCCTCTCCGGTGGTTCGACCATGTTTTCAGGAATCGCCGATAGAATGAGCAAGGAAATCTCTGCATTGGCTCCAAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAGAGAAAATATAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTGAGTACCTTCCAGCAGGTTGATATTGCTCGGAGATCTTCACAAAATGCTTTCAGTTTAGCTTTCACTTATTTTCAATACTTATCACTGTCGTTGCTGTCTTGTTTCTTTTCCTGCAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTGCACAGGAAATGCTTCTAAAAATGACAAGAAACAGAAAGATTAA 1125 44.62 MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFSGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVDIARRSSQNAFSLAFTYFQYLSLSLLSCFFSCRCGLQRQSMMNLGHQLCTGNASKNDKKQKD* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21776991 21779100 + CsaV3_5G026650.1 Csa05g01846 530233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01846 374 ProSitePatterns Actins and actin-related proteins signature. 61 73 IPR020902 -
Csa05g01846 374 ProSitePatterns Actins signature 1. 10 20 IPR004001 -
Csa05g01846 374 Gene3D - 2 316 - -
Csa05g01846 374 SMART actin_3 1 323 IPR004000 -
Csa05g01846 374 PANTHER ACTIN 1 318 IPR004000 -
Csa05g01846 374 PANTHER ACTIN-97 1 318 - -
Csa05g01846 374 SUPERFAMILY Actin-like ATPase domain 104 316 IPR043129 -
Csa05g01846 374 Gene3D Actin; Chain A, domain 4 137 228 - -
Csa05g01846 374 Pfam Actin 7 317 IPR004000 -
Csa05g01846 374 SUPERFAMILY Actin-like ATPase domain 1 109 IPR043129 -
Csa05g01846 374 Gene3D - 95 295 - -
Csa05g01846 374 CDD NBD_sugar-kinase_HSP70_actin 31 138 - -
Csa05g01846 374 PRINTS Actin signature 6 17 IPR004000 -
Csa05g01846 374 PRINTS Actin signature 18 40 IPR004000 -
Csa05g01846 374 PRINTS Actin signature 72 85 IPR004000 -
Csa05g01846 374 PRINTS Actin signature 97 116 IPR004000 -
Csa05g01846 374 PRINTS Actin signature 193 209 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01846 K10355 ACTF; actin, other eukaryote - csv:101214247 731.095
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01846 Csa-Chr5:21776991 Csa06g02804 Csa-Chr6:24455342 0 dispersed
Csa04g01489 Csa-Chr4:14638865 Csa05g01846 Csa-Chr5:21776991 0 wgd
Csa05g00720 Csa-Chr5:4923931 Csa05g01846 Csa-Chr5:21776991 2.36E-13 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT2G37620 97.1 1.9e-215 745.0
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT2G37620 96.8 5.5e-215 743.4
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT2G37620 96.0 1.3e-213 738.8
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT2G37620 95.5 1.8e-213 738.4
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT2G37620 95.5 1.8e-213 738.4
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT2G37620 94.4 1.1e-212 735.7
Csa05g01846 . 1 316 Cytoskeleton Gene Families AT2G37620 94.3 5.7e-172 600.5
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT5G59370 97.1 4.6e-214 740.3
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT5G59370 96.6 1.0e-213 739.2
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 1.8e-213 738.4
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT5G59370 94.4 2.4e-210 728.0
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT5G59370 94.4 2.4e-210 728.0
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT5G59370 93.9 4.1e-210 727.2
Csa05g01846 . 1 316 Cytoskeleton Gene Families AT5G59370 95.6 1.0e-173 606.3
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT3G46520 97.4 2.1e-214 741.5
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT3G46520 96.8 4.6e-214 740.3
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT3G46520 97.1 7.9e-214 739.6
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT3G46520 94.7 1.1e-210 729.2
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT3G46520 94.7 1.1e-210 729.2
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT3G46520 94.2 1.8e-210 728.4
Csa05g01846 . 1 316 Cytoskeleton Gene Families AT3G46520 95.9 4.7e-174 607.4
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT3G12110 97.1 2.5e-215 744.6
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT3G12110 97.1 3.2e-215 744.2
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT3G12110 96.8 9.3e-215 742.7
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT3G12110 95.5 6.7e-213 736.5
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT3G12110 95.5 6.7e-213 736.5
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT3G12110 95.2 8.7e-213 736.1
Csa05g01846 . 1 316 Cytoskeleton Gene Families AT3G12110 94.6 8.8e-173 603.2
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT3G18780 93.1 3.4e-209 724.2
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT3G18780 93.1 3.4e-209 724.2
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-208 722.2
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 1.7e-208 721.8
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 2.9e-208 721.1
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 3.8e-208 720.7
Csa05g01846 . 1 322 Cytoskeleton Gene Families AT3G18780 91.0 3.7e-171 597.8
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT1G49240 93.4 1.2e-209 725.7
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT1G49240 93.4 1.2e-209 725.7
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 4.5e-209 723.8
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 5.9e-209 723.4
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 1.0e-208 722.6
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 1.3e-208 722.2
Csa05g01846 . 1 322 Cytoskeleton Gene Families AT1G49240 91.0 3.7e-171 597.8
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT5G09810 98.4 5.9e-217 750.0
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT5G09810 98.4 5.9e-217 750.0
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT5G09810 96.6 4.6e-214 740.3
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT5G09810 96.6 4.6e-214 740.3
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 1.3e-213 738.8
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT5G09810 96.0 2.3e-213 738.0
Csa05g01846 . 1 316 Cytoskeleton Gene Families AT5G09810 94.3 7.5e-172 600.1
Csa02g00079 . 1 134 Cytoskeleton Gene Families AT2G19760 76.1 1.2e-55 212.6
Csa02g00080 . 1 145 Cytoskeleton Gene Families AT2G19760 69.7 7.6e-55 209.9
Csa03g02348 . 1 132 Cytoskeleton Gene Families AT2G19760 73.5 2.9e-54 208.0
Csa02g00080 . 1 145 Cytoskeleton Gene Families AT4G29350 71.0 4.5e-55 210.7
Csa03g02348 . 1 132 Cytoskeleton Gene Families AT4G29350 75.0 4.5e-55 210.7
Csa02g00079 . 1 134 Cytoskeleton Gene Families AT4G29350 74.6 2.2e-54 208.4
Csa02g00080 . 1 100 Cytoskeleton Gene Families AT5G56600 70.0 7.0e-38 153.3
Csa02g00079 . 1 134 Cytoskeleton Gene Families AT4G29340 85.2 1.4e-64 242.3
Csa03g02348 . 1 132 Cytoskeleton Gene Families AT4G29340 68.9 8.1e-52 199.9
Csa02g00080 . 1 145 Cytoskeleton Gene Families AT4G29340 64.9 2.3e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276