Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01846 ATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGCGATGAAGCTCAATCCAAGCGTGGTATTTTGACTTTGAAATACCCAATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATATGGCATCACACGTTCTATAACGAGCTCCGTGTTGCACCGGAGGAGCATCCTGTACTCCTAACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTCAACACTCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTATATGCCAGTGGCCGAACGACTGGCATTGTGATGGACTCTGGTGATGGTGTCAGTCATACAGTCCCCATATATGAGGGCTATGCTCTTCCACATGCCATTCTTCGACTCGATCTAGCTGGCCGTGATCTAACTGATAACTTGATGAAAATCCTCACGGAGCGTGGTTATTCATTTACCACCACAGCAGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGCTTTCATATATCGCACTTGACTACGAGCAGGAACTTGAAACATCCAAAACCAGTTCATCTGTTGAAAAGAGCTATGAGTTGCCTGATGGACAGGTCATCACAATTGGTGCTGAGCGTTTTAGATGCCCAGAAGTTCTTTTCCAGCCATCCATGATCGGAATGGAAGCTGCAGGTATTCATGAAACCACGTATAATTCCATCATGAAGTGCGACGTGGATATCAGGAAGGATCTGTATGGCAACATTGTCCTCTCCGGTGGTTCGACCATGTTTTCAGGAATCGCCGATAGAATGAGCAAGGAAATCTCTGCATTGGCTCCAAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAGAGAAAATATAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTGAGTACCTTCCAGCAGGTTGATATTGCTCGGAGATCTTCACAAAATGCTTTCAGTTTAGCTTTCACTTATTTTCAATACTTATCACTGTCGTTGCTGTCTTGTTTCTTTTCCTGCAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTGCACAGGAAATGCTTCTAAAAATGACAAGAAACAGAAAGATTAA 1125 44.62 MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFSGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVDIARRSSQNAFSLAFTYFQYLSLSLLSCFFSCRCGLQRQSMMNLGHQLCTGNASKNDKKQKD* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21776991 21779100 + CsaV3_5G026650.1 Csa05g01846 530233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01846 374 ProSitePatterns Actins and actin-related proteins signature. 61 73 IPR020902 -
Csa05g01846 374 ProSitePatterns Actins signature 1. 10 20 IPR004001 -
Csa05g01846 374 Gene3D - 2 316 - -
Csa05g01846 374 SMART actin_3 1 323 IPR004000 -
Csa05g01846 374 PANTHER ACTIN 1 318 IPR004000 -
Csa05g01846 374 PANTHER ACTIN-97 1 318 - -
Csa05g01846 374 SUPERFAMILY Actin-like ATPase domain 104 316 IPR043129 -
Csa05g01846 374 Gene3D Actin; Chain A, domain 4 137 228 - -
Csa05g01846 374 Pfam Actin 7 317 IPR004000 -
Csa05g01846 374 SUPERFAMILY Actin-like ATPase domain 1 109 IPR043129 -
Csa05g01846 374 Gene3D - 95 295 - -
Csa05g01846 374 CDD NBD_sugar-kinase_HSP70_actin 31 138 - -
Csa05g01846 374 PRINTS Actin signature 6 17 IPR004000 -
Csa05g01846 374 PRINTS Actin signature 18 40 IPR004000 -
Csa05g01846 374 PRINTS Actin signature 72 85 IPR004000 -
Csa05g01846 374 PRINTS Actin signature 97 116 IPR004000 -
Csa05g01846 374 PRINTS Actin signature 193 209 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01846 Csa-Chr5:21776991 Csa06g02804 Csa-Chr6:24455342 0 dispersed
Csa04g01489 Csa-Chr4:14638865 Csa05g01846 Csa-Chr5:21776991 0 wgd
Csa05g00720 Csa-Chr5:4923931 Csa05g01846 Csa-Chr5:21776991 2.36E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01846 K10355 - csv:101214247 731.095