Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01856 ATGGTGCCAACTATTTCCACAATCTTTCTCATCTCATTCTCTAATTTCTTGCTAACAATGTCATTACCATTTGAAAACAGAGCGCTCATCGGAGGTCTTCACGGCGCCGGACCATGGCACAATGCTCATGCTACTTTCTACGGCGGAAATGACGCTGCCGGCACAATGGGCGGCGCGTGTGGTTACGGCAACTTGTACAGCCAAGGCTATGGCGTGAACACGGCGGCGCTCAGCACAGCTCTTTTCAACGACGGATACAGCTGCGGAGCTTGTTTCGAGATCAAGTGTGTTAATGACCCGCAATGGTGCCACGCCGGTAACCCTTCTATTTTTGTGACGGCCACCAATTTTTGTCCTCCCAATTATGCTCTGCCTAATGACAATGGTGGATGGTGCAACCCTCCTCGCCCTCACTTCGACCTCTCCATGCCCATGTTTCTTAAGATTGCCCAATACCGTGCCGGTATTGTTCCCGTCTCCTTTCGCAGAGTGGCATGTCGGAGGGAGGGAGGAATGAGGTTTACGATCAACGGATTTAAATACTTCAATTTAGTATTGATAACCAACGTGGGAGGCGCAGGGGATATTGTGAGTGTGAGTATCAAAGGGTCGAAGACAGGGTGGATGAGTATGACACGTAATTGGGGTCAAAACTGGCAATCAAACACCGTTTTGGTGGGTCAGTCACTTTCGTTTAGGGTTAAGAGCAGTGATAATCGGATTTCAACTTCTTCCAACATTGTTCCTTCTCATTGGCAGTTTGGTCAAACTTTCATCGGCAAAAACTTCTAA 792 48.36 MVPTISTIFLISFSNFLLTMSLPFENRALIGGLHGAGPWHNAHATFYGGNDAAGTMGGACGYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRRVACRREGGMRFTINGFKYFNLVLITNVGGAGDIVSVSIKGSKTGWMSMTRNWGQNWQSNTVLVGQSLSFRVKSSDNRISTSSNIVPSHWQFGQTFIGKNF* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21845772 21847067 - CsaV3_5G026750.1 Csa05g01856 530243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01856 263 PANTHER EXPANSIN-A15 19 263 IPR002963 GO:0009664
Csa05g01856 263 Pfam Lytic transglycolase 74 161 IPR009009 -
Csa05g01856 263 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Csa05g01856 263 PRINTS Expansin signature 96 107 IPR002963 GO:0009664
Csa05g01856 263 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Csa05g01856 263 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Csa05g01856 263 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Csa05g01856 263 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Csa05g01856 263 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Csa05g01856 263 PRINTS Expansin signature 217 238 IPR002963 GO:0009664
Csa05g01856 263 PRINTS Expansin signature 246 262 IPR002963 GO:0009664
Csa05g01856 263 SMART dpbb_1 74 161 IPR007112 -
Csa05g01856 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 260 IPR007117 -
Csa05g01856 263 SUPERFAMILY Barwin-like endoglucanases 38 189 IPR036908 -
Csa05g01856 263 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Csa05g01856 263 Gene3D - 32 167 IPR036908 -
Csa05g01856 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 171 IPR007112 -
Csa05g01856 263 Gene3D - 172 263 IPR036749 -
Csa05g01856 263 PANTHER EXPANSIN-A6 19 263 - -
Csa05g01856 263 SUPERFAMILY PHL pollen allergen 168 259 IPR036749 -
Csa05g01856 263 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Csa05g01856 263 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Csa05g01856 263 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Csa05g01856 263 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Csa05g01856 263 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Csa05g01856 263 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02423 Csa-Chr1:21492231 Csa05g01856 Csa-Chr5:21845772 5.56E-149 dispersed
Csa05g00717 Csa-Chr5:4890874 Csa05g01856 Csa-Chr5:21845772 3.33E-151 dispersed
Csa05g01856 Csa-Chr5:21845772 Csa06g01479 Csa-Chr6:12545225 3.49E-152 dispersed
Csa06g01206 Csa-Chr6:10229418 Csa05g01856 Csa-Chr5:21845772 2.66E-94 transposed
Csa04g01497 Csa-Chr4:14702397 Csa05g01856 Csa-Chr5:21845772 2.10E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01856 - - csv:101216168 513.842