Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01868 ATGGCGGCTTCTTCTTCTTCTTCTTCTTCCCTTTACTTTTTGTTGCTTCTTTTATCTCTTTCTTTCTTCTTGTCTATGACTGCTCCACTACCTTCCAATTCCTCCTTACCTTTTGTTCATCAACATCCTCATCTCGTCGTTGAAGAAGTTCAAAGGAGCATAAATGGATCAAGAAGAAACTTGGGGTATTTATCATGTGGAACAGGAAACCCAATAGACGATTGTTGGAGATGCGATTCCAATTGGGAAACAAACCGTAAACGCTTAGCCGATTGCGCCATCGGCTTCGGCAAAAACGCAATCGGCGGCAAAAACGGCCGTTTCTACGTAGTCACTGACTCCGGGAACGACGACCCACTTAACCCCCGTCCGGGCACCCTCCGCCACGCCGTCATCCAAAACGAACCCTTATGGATCATCTTCAAGCGCGACATGGTAATCAAACTCGCCCAAGAGCTGGTCATGAACTCCTTCAAAACCATCGACGGACGTGGCGCCAGCGTCCACCTGGCAGGTGGCCCTTGTATTAAAATCCACTACGCGACGAATATAATCATCCACGGCATCCATATTCACGATTGCAAGAGAGGTGGGAATGCTAACATACGAGACTCCCCACAGCATGCTGGCTGGTGGACTGCATCTGACGGTGATGGTGTCTCCATTTTAGGTGGTAAACAAATCTGGATCGATCATTGCTCTTTGTCTAATTGTAATGATGGGTTGATTGACGCCATTCATGGATCAACGGCTATTACTATATCCAATAACTATATGACACATCATGATAAGGTTATGTTATTGGGACATAGTGATTCTTTCACCCAAGATAAAAACATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAAGGACTTGTCCAACGAATGCCAAGATGTAGACATGGATATTTCCATGTAGTGAACAACGATTACACTCATTGGGAAATGTATGCCATCGGAGGGAGTGCTTCACCCACGATATACAGCCAAGGCAATAGATTCGTGGCGCCTTATAATCGGTTTCGAAAGGAGGTAACAAAGCACGAGGACGCACCCGAGAGCGAGTGGCGCCATTGGAACTGGCGTTCTGAGGGTGACTTGTTGTTGAATGGCGCCTATTTTCGCCAATCAGGCGCTGGTGCCTCCTCTAGCTATGCACGAGCTTATAGTCTCAGCGCTAGACCCTCATCTCTTGTTGGGGATATCACTATCACTGCAGGTGCTCTCAATTGCCGCAGGGGCTCTCGTTGCTAA 1257 47.02 MAASSSSSSSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIKLAQELVMNSFKTIDGRGASVHLAGGPCIKIHYATNIIIHGIHIHDCKRGGNANIRDSPQHAGWWTASDGDGVSILGGKQIWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFVAPYNRFRKEVTKHEDAPESEWRHWNWRSEGDLLLNGAYFRQSGAGASSSYARAYSLSARPSSLVGDITITAGALNCRRGSRC* 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21944533 21946661 - CsaV3_5G026870.1 Csa05g01868 530255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01868 418 Pfam Pectate lyase 153 335 IPR002022 -
Csa05g01868 418 SUPERFAMILY Pectin lyase-like 51 412 IPR011050 -
Csa05g01868 418 SMART amb_all 144 341 IPR002022 -
Csa05g01868 418 PANTHER PECTATE LYASE 17 415 - -
Csa05g01868 418 Gene3D - 69 411 IPR012334 -
Csa05g01868 418 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Csa05g01868 418 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Csa05g01868 418 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Csa05g01868 418 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Csa05g01868 418 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Csa05g01868 418 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Csa05g01868 418 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Csa05g01868 418 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Csa05g01868 418 PANTHER PECTATE LYASE 18-RELATED 17 415 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00989 Csa-Chr2:9495612 Csa05g01868 Csa-Chr5:21944533 0 dispersed
Csa02g01789 Csa-Chr2:17302889 Csa05g01868 Csa-Chr5:21944533 0 dispersed
Csa03g01128 Csa-Chr3:8895882 Csa05g01868 Csa-Chr5:21944533 0 dispersed
Csa03g02663 Csa-Chr3:25266042 Csa05g01868 Csa-Chr5:21944533 0 dispersed
Csa05g01868 Csa-Chr5:21944533 Csa05g02772 Csa-Chr5:28428196 0 dispersed
Csa05g01868 Csa-Chr5:21944533 Csa01g00913 Csa-Chr1:5694974 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01868 K01728 - csv:101217834 837.41