Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01875 ATGGAAGTAATTGGTACAAATTTGAGCCCTATGATTATTATTGTATTAGCATTAAGCTTTGCAATATCAATCATCTTTCACCTTCTTCTTAAACTCTTTCTAGTTACTTCAAAAAAAAACCCTAATTTGCCTCCTGGCTCCATGGGCTTACCCTTTGTTGGTGAAACTCTTAGCTTCCTCAACCCTCATCATTCCAACTCAATTGGTACCTTCCTTCAACACCATTTCTCAAGGTATGGGAAGATTTTCAAATCTCGTCTATTCGGTAGGCCGGCCATAGTGTCATGTGATAGAGAGCTTAACTACTTCGTTCTTCAAAACGACGATAAGCTTTTCAAAGTAAGCTATCCAAAAGCAATGCATAATATTCTAGGTACCAATTCTTTGCTTATTAGCGCCGGCGACACTCACCGGAAACTTCGAAGTGTCATTGTTAGCTTCATCACCAGGTGCAAAACCAGACCCAATTTTCTTCACTCCCTCCACAATTTATCTGTCTCTTTAACGGACTCTTGGAGATCCCAAACCCATGTCTCCTTTATCAAAGAAATGAAGATGTTTGCTTTAAGCCTTATGGTGAAGGAAGTATTTGGCATCGAAGCAAAGGAGTTGATAGGGACAAAGATATTTGAAGAGTTTGAAACCTTTATGATAGGCTTTGTTTCTTTGCCTTTAAATTTCCCAGGAACTCCTTACTTTAAGGCTGTCAAGGCTAGAGGAAGACTTTCTACGATTGTGAAAGAGATGATAAGGGAGAGAAGAAAGAGAGGATTAGTTGGAGGGAATAATAATGATGATGATTTTCTACAAGTGTTAATGTCAAATAATTGGAAGCTTAGTGATGAAGAAATTGTGAGTGTTGTTTTGGACATAATGCTTGGAAGTTACGAGACAACAGCTACTCTCTTGGGATTGATTGTCTATTTTCTTGCTCATTCACCTCCTAATATTCTTGCAAAATTGAAGGAAGAACATCAAGCAATAAGAAATGGAAAAAGAAAGGGAGAATGTCTCAATTTGGAAGATTACAAGCGAATGGAGTTCACATTCAATGTGGCATATGAAGCCATGAGATGTGGGAATGTGGTGAAGTTTTTACATAGGGAAGCTATTACAGATGTCAAATTCAAAGATATTGTCATACCCAGTGGGTGGAAAGTTCATCCAGTTTTCTCAGCAATTCATCTTGATCCAACCCTTCATCCAAATCCACAACAATTTAATCCTTCCAGATGGAGTGATGATAAGGAAATGAACAAAAAAGTGACACCATTTGGTGGAGGGCCAAGACTTTGTCCAGGGATTGAGCTTGCCAAACTAGAGATTGCTTTTTTCGTTCATCATTTTGTCCTTAATTATAGGTGGAAGACAAGAGATGATGAATGTCCACTAGCTTACCCATATGTTAAATTTAAAAGAGACTTGATGCTTGAGATTGAGCCCTTGCAGCTACTCAAATGA 1461 38.26 MEVIGTNLSPMIIIVLALSFAISIIFHLLLKLFLVTSKKNPNLPPGSMGLPFVGETLSFLNPHHSNSIGTFLQHHFSRYGKIFKSRLFGRPAIVSCDRELNYFVLQNDDKLFKVSYPKAMHNILGTNSLLISAGDTHRKLRSVIVSFITRCKTRPNFLHSLHNLSVSLTDSWRSQTHVSFIKEMKMFALSLMVKEVFGIEAKELIGTKIFEEFETFMIGFVSLPLNFPGTPYFKAVKARGRLSTIVKEMIRERRKRGLVGGNNNDDDFLQVLMSNNWKLSDEEIVSVVLDIMLGSYETTATLLGLIVYFLAHSPPNILAKLKEEHQAIRNGKRKGECLNLEDYKRMEFTFNVAYEAMRCGNVVKFLHREAITDVKFKDIVIPSGWKVHPVFSAIHLDPTLHPNPQQFNPSRWSDDKEMNKKVTPFGGGPRLCPGIELAKLEIAFFVHHFVLNYRWKTRDDECPLAYPYVKFKRDLMLEIEPLQLLK* 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21981719 21986438 + CsaV3_5G026940.1 Csa05g01875 530262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01875 486 SUPERFAMILY Cytochrome P450 39 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g01875 486 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 425 434 IPR017972 GO:0005506|GO:0016705
Csa05g01875 486 PRINTS E-class P450 group I signature 76 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g01875 486 PRINTS E-class P450 group I signature 283 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g01875 486 PRINTS E-class P450 group I signature 390 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g01875 486 PRINTS E-class P450 group I signature 422 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g01875 486 PRINTS E-class P450 group I signature 432 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g01875 486 PANTHER CYTOCHROME P450, FAMILY 724, SUBFAMILY A, POLYPEPTIDE 1 47 481 - -
Csa05g01875 486 PRINTS P450 superfamily signature 294 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g01875 486 PRINTS P450 superfamily signature 423 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g01875 486 PRINTS P450 superfamily signature 432 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g01875 486 PANTHER CYTOCHROME P450 26 47 481 - -
Csa05g01875 486 Pfam Cytochrome P450 44 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g01875 486 Gene3D Cytochrome P450 34 479 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00509 Csa-Chr4:3345127 Csa05g01875 Csa-Chr5:21981719 2.71E-128 dispersed
Csa05g01875 Csa-Chr5:21981719 Csa07g02396 Csa-Chr7:22043310 8.70E-83 dispersed
Csa05g01875 Csa-Chr5:21981719 Csa03g04086 Csa-Chr3:35819170 1.83E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01875 K12639 - csv:101215045 983.4