Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g01889 | ATGGGGTCCGGTAATGAGTTATGTTCACAAGAGTTTGATTTGGATGCTAAGTGGCTGGTCGATCCGAAGCAAATCTTTGTTGGGCCAAGGATTGGGGAGGGCGCGCATGGCAAAGTGCACAAGGGAAAATATAAAGACCAAAATGTTGCAATTAAAATAATTCGAAAAGGTGAAGCCCCAGAAGAAATTGCGAAAACGGAGGCACGCTTTGCTCGGGAGGTCGCTATGTTATCCAAAGTTCAACACAAGAATCTTGCAAAGTTTATAGGTGCTTGCAAGGAGCCTATTATGGTGATAGTAACTGAGCTTCTTTCAGGCGGAACTTTACGGAAGTACCTGTTGAGTATAAGGCCAAGGTGCTTGGACTTCAGTGAGGCAGTTGGCTTTGCACTTGATATTGCCCGTGCAATGGACTGCTTACATTCCCATGGGATCATTCACCGTGACCTCAAACCTGAGAATTTGATCTTGACTGCAGATCACAAAACTGTTAAACTTGCTGATTTTGGCCTTGCTAGAGAAGAGTCAGTAACAGAGATGATGACAGCTGAAACTGGGACTTACAGATGGATGGCTCCAGAGCTATACAGTACAGTCACTCTACGAAATGGAGAGAAGAAGCATTACAATCACAAGGTGGATGTTTATAGCTTTGGAATTGTATTCTGGGAGATTATCCAAAACAAGTTGCCTTTTGAAGGCATGTCAAATCTACAAGCCGCATATGCGGCTGCTTTTAAGAATTTACGACCGAGTGCCGAGAACCTCCCAGCGGATTTGGCACCAATTGTGACTTCCTGTTGGAAAGAGGATCCGAATGATCGGCCTAACTTCAACCAAATCATACAGATGCTCTTTAAATGTCTATCCACCATTCCACAACCAGAATATGTTCCACCACCAACTATGCACCCACCTGATAATGCAGTGCTGCCACCAGAGTCTCCTGGAACAAGTTCTTTGATGGCAACCACGAGACATGGCACCGGGGAAGTCATGAACAGTGAAATAGGAGAGAAACCGACCGGTTTATTCTCGTGTTTCGCTGGTAACTGTTACTGA | 1062 | 44.92 | MGSGNELCSQEFDLDAKWLVDPKQIFVGPRIGEGAHGKVHKGKYKDQNVAIKIIRKGEAPEEIAKTEARFAREVAMLSKVQHKNLAKFIGACKEPIMVIVTELLSGGTLRKYLLSIRPRCLDFSEAVGFALDIARAMDCLHSHGIIHRDLKPENLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRNGEKKHYNHKVDVYSFGIVFWEIIQNKLPFEGMSNLQAAYAAAFKNLRPSAENLPADLAPIVTSCWKEDPNDRPNFNQIIQMLFKCLSTIPQPEYVPPPTMHPPDNAVLPPESPGTSSLMATTRHGTGEVMNSEIGEKPTGLFSCFAGNCY* | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 22098286 | 22102896 | - | CsaV3_5G027080.1 | Csa05g01889 | 530276 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g01889 | 353 | ProSiteProfiles | Protein kinase domain profile. | 25 | 287 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g01889 | 353 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 56 | IPR017441 | GO:0005524 | |
Csa05g01889 | 353 | Pfam | Protein tyrosine and serine/threonine kinase | 29 | 285 | IPR001245 | GO:0004672|GO:0006468 | |
Csa05g01889 | 353 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 1 | 328 | - | - | |
Csa05g01889 | 353 | PANTHER | BNAA06G32000D PROTEIN | 1 | 328 | - | - | |
Csa05g01889 | 353 | SUPERFAMILY | Protein kinase-like (PK-like) | 17 | 316 | IPR011009 | - | |
Csa05g01889 | 353 | Gene3D | Transferase(Phosphotransferase) domain 1 | 106 | 297 | - | - | |
Csa05g01889 | 353 | CDD | STKc_MAP3K-like | 31 | 285 | - | - | |
Csa05g01889 | 353 | SMART | serkin_6 | 25 | 287 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g01889 | 353 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 145 | 157 | IPR008271 | GO:0004672|GO:0006468 | |
Csa05g01889 | 353 | PRINTS | Tyrosine kinase catalytic domain signature | 101 | 114 | IPR001245 | GO:0004672|GO:0006468 | |
Csa05g01889 | 353 | PRINTS | Tyrosine kinase catalytic domain signature | 139 | 157 | IPR001245 | GO:0004672|GO:0006468 | |
Csa05g01889 | 353 | PRINTS | Tyrosine kinase catalytic domain signature | 213 | 235 | IPR001245 | GO:0004672|GO:0006468 | |
Csa05g01889 | 353 | PRINTS | Tyrosine kinase catalytic domain signature | 256 | 278 | IPR001245 | GO:0004672|GO:0006468 | |
Csa05g01889 | 353 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 104 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa03g03981 | Csa05g01889 | CCT | |
Csa03g03981 | Csa05g01889 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g01889 | Csa-Chr5:22098286 | Csa02g00709 | Csa-Chr2:5741381 | 8.13E-76 | dispersed | |
Csa01g00107 | Csa-Chr1:613749 | Csa05g01889 | Csa-Chr5:22098286 | 0 | transposed | |
Csa02g01376 | Csa-Chr2:13218794 | Csa05g01889 | Csa-Chr5:22098286 | 2.51E-10 | transposed | |
Csa03g03011 | Csa-Chr3:28595217 | Csa05g01889 | Csa-Chr5:22098286 | 9.34E-149 | transposed | |
Csa06g03220 | Csa-Chr6:27257598 | Csa05g01889 | Csa-Chr5:22098286 | 3.66E-95 | transposed | |
Csa03g03981 | Csa-Chr3:34800785 | Csa05g01889 | Csa-Chr5:22098286 | 8.78E-168 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78256 | PF07714 | PK_Tyr_Ser-Thr | 5.40E-59 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g01889 | - | - | csv:101220915 | 724.931 |