Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01889 ATGGGGTCCGGTAATGAGTTATGTTCACAAGAGTTTGATTTGGATGCTAAGTGGCTGGTCGATCCGAAGCAAATCTTTGTTGGGCCAAGGATTGGGGAGGGCGCGCATGGCAAAGTGCACAAGGGAAAATATAAAGACCAAAATGTTGCAATTAAAATAATTCGAAAAGGTGAAGCCCCAGAAGAAATTGCGAAAACGGAGGCACGCTTTGCTCGGGAGGTCGCTATGTTATCCAAAGTTCAACACAAGAATCTTGCAAAGTTTATAGGTGCTTGCAAGGAGCCTATTATGGTGATAGTAACTGAGCTTCTTTCAGGCGGAACTTTACGGAAGTACCTGTTGAGTATAAGGCCAAGGTGCTTGGACTTCAGTGAGGCAGTTGGCTTTGCACTTGATATTGCCCGTGCAATGGACTGCTTACATTCCCATGGGATCATTCACCGTGACCTCAAACCTGAGAATTTGATCTTGACTGCAGATCACAAAACTGTTAAACTTGCTGATTTTGGCCTTGCTAGAGAAGAGTCAGTAACAGAGATGATGACAGCTGAAACTGGGACTTACAGATGGATGGCTCCAGAGCTATACAGTACAGTCACTCTACGAAATGGAGAGAAGAAGCATTACAATCACAAGGTGGATGTTTATAGCTTTGGAATTGTATTCTGGGAGATTATCCAAAACAAGTTGCCTTTTGAAGGCATGTCAAATCTACAAGCCGCATATGCGGCTGCTTTTAAGAATTTACGACCGAGTGCCGAGAACCTCCCAGCGGATTTGGCACCAATTGTGACTTCCTGTTGGAAAGAGGATCCGAATGATCGGCCTAACTTCAACCAAATCATACAGATGCTCTTTAAATGTCTATCCACCATTCCACAACCAGAATATGTTCCACCACCAACTATGCACCCACCTGATAATGCAGTGCTGCCACCAGAGTCTCCTGGAACAAGTTCTTTGATGGCAACCACGAGACATGGCACCGGGGAAGTCATGAACAGTGAAATAGGAGAGAAACCGACCGGTTTATTCTCGTGTTTCGCTGGTAACTGTTACTGA 1062 44.92 MGSGNELCSQEFDLDAKWLVDPKQIFVGPRIGEGAHGKVHKGKYKDQNVAIKIIRKGEAPEEIAKTEARFAREVAMLSKVQHKNLAKFIGACKEPIMVIVTELLSGGTLRKYLLSIRPRCLDFSEAVGFALDIARAMDCLHSHGIIHRDLKPENLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRNGEKKHYNHKVDVYSFGIVFWEIIQNKLPFEGMSNLQAAYAAAFKNLRPSAENLPADLAPIVTSCWKEDPNDRPNFNQIIQMLFKCLSTIPQPEYVPPPTMHPPDNAVLPPESPGTSSLMATTRHGTGEVMNSEIGEKPTGLFSCFAGNCY* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22098286 22102896 - CsaV3_5G027080.1 Csa05g01889 530276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01889 353 ProSiteProfiles Protein kinase domain profile. 25 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01889 353 ProSitePatterns Protein kinases ATP-binding region signature. 31 56 IPR017441 GO:0005524
Csa05g01889 353 Pfam Protein tyrosine and serine/threonine kinase 29 285 IPR001245 GO:0004672|GO:0006468
Csa05g01889 353 PANTHER SERINE-THREONINE PROTEIN KINASE 1 328 - -
Csa05g01889 353 PANTHER BNAA06G32000D PROTEIN 1 328 - -
Csa05g01889 353 SUPERFAMILY Protein kinase-like (PK-like) 17 316 IPR011009 -
Csa05g01889 353 Gene3D Transferase(Phosphotransferase) domain 1 106 297 - -
Csa05g01889 353 CDD STKc_MAP3K-like 31 285 - -
Csa05g01889 353 SMART serkin_6 25 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01889 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Csa05g01889 353 PRINTS Tyrosine kinase catalytic domain signature 101 114 IPR001245 GO:0004672|GO:0006468
Csa05g01889 353 PRINTS Tyrosine kinase catalytic domain signature 139 157 IPR001245 GO:0004672|GO:0006468
Csa05g01889 353 PRINTS Tyrosine kinase catalytic domain signature 213 235 IPR001245 GO:0004672|GO:0006468
Csa05g01889 353 PRINTS Tyrosine kinase catalytic domain signature 256 278 IPR001245 GO:0004672|GO:0006468
Csa05g01889 353 Gene3D Phosphorylase Kinase; domain 1 13 104 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03981 Csa05g01889 CCT
Csa03g03981 Csa05g01889 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01889 Csa-Chr5:22098286 Csa02g00709 Csa-Chr2:5741381 8.13E-76 dispersed
Csa01g00107 Csa-Chr1:613749 Csa05g01889 Csa-Chr5:22098286 0 transposed
Csa02g01376 Csa-Chr2:13218794 Csa05g01889 Csa-Chr5:22098286 2.51E-10 transposed
Csa03g03011 Csa-Chr3:28595217 Csa05g01889 Csa-Chr5:22098286 9.34E-149 transposed
Csa06g03220 Csa-Chr6:27257598 Csa05g01889 Csa-Chr5:22098286 3.66E-95 transposed
Csa03g03981 Csa-Chr3:34800785 Csa05g01889 Csa-Chr5:22098286 8.78E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78256 PF07714 PK_Tyr_Ser-Thr 5.40E-59 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01889 - - csv:101220915 724.931