Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01896 ATGGCTTCTTCAAGCTACACAAACTCACCATGTGCAGCATGCAAATTCCTAAGAAGAAAATGCTTAGCTGATTGCATATTTGCACCCTATTTCCCCCCTGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTCGGAGCCAGCAATGTGAGCAAGCTTCTCAATGAGGTTCAGCCCCATCAGCGCGAGGATGCTGTAAATTCTCTAGCTTATGAGGCCGAGGCTCGTATGAAAGACCCTGTCTACGGCTGCGTTGGGGCCATCTCCGTTTTGCAACGACAAGTTATTCGTCTCCAAAAAGAGCTCGACGCTACAAATGCTGATTTGGTACGATATGCGAGCGGGAGCGCCCGGCCGCCCTCGCAATATGGAAGGAGAGCAACAACTGCCTCGCAAATCTTCCCCGCACAACTATAA 420 49.52 MASSSYTNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYASGSARPPSQYGRRATTASQIFPAQL* 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22166489 22171391 + CsaV3_5G027150.1 Csa05g01896 530283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01896 139 Coils Coil 89 109 - -
Csa05g01896 139 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Csa05g01896 139 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 119 - -
Csa05g01896 139 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 119 - -
Csa05g01896 139 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03970 Csa05g01896 CCT
Csa03g03970 Csa05g01896 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01896 Csa-Chr5:22166489 Csa06g00193 Csa-Chr6:1330357 1.69E-48 dispersed
Csa07g01611 Csa-Chr7:16618861 Csa05g01896 Csa-Chr5:22166489 1.34E-32 dispersed
Csa02g01532 Csa-Chr2:14567747 Csa05g01896 Csa-Chr5:22166489 3.35E-52 transposed
Csa01g00875 Csa-Chr1:5466501 Csa05g01896 Csa-Chr5:22166489 6.93E-62 wgd
Csa03g03970 Csa-Chr3:34700634 Csa05g01896 Csa-Chr5:22166489 9.84E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31770 PF03195 LOB 5.90E-42 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01896 - - csv:101216489 268.47