Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01908 ATGTGGAATAACGCTGTAATGGCTTTGGCTATCTCGTTTTCCCCTAATTCTATTGCTACGGCTACTGCGGCTATTCCATGCCCTAACCGAACCCCTAATTTCCCTCACTTTTCGCACATTCTTCATTTCCGTTCTCACGAATCAATTCCATGGCGTTCTTCTTCTTCTTCATCCATCTCTGGTTCTTCGTTTGGATTTACTCCGAGGTTTGAGAAATTTGTTGTAATGGCTGCTTCCTCTGTGCCGGAGAGTGCGGGGGAGGGTGTGGAATCGGTTGATTTGGTTCAGAATCTCCGGCTTGGTGCAATGTTTGGGATTTGGTATCTTTTGAATATCTACTACAATATTTTCAACAAACAGGTTTTGAAAGCCTTTCCGTTTCCAACTACGGTGACAGCTTTCCAGTTCGGGTGTGGTACGATCATAGTAAACTTAATGTGGGCTCTTAATTTTCATCACAGACCCAAGATCAGTTCATCCCAGTTTGCTACCATTCTTCCACTGGCTGTAGCGCATACAATGGGAAACATATTAACCAATGTGAGTCTTGGGAGAGTTGCGGTTTCATTTACTCACACCATCAAAGCAATGGAGCCATTTTTCACTGTCCTTCTCTCTGCTTTGTTTTTGGCTGAGAGGCCCAGTTTTTGGGTTGTTTTTTCTCTGGTTCCCGTTGTAGGAGGAGTGGCACTCGCTTCTTTTACTGAAGCCTCATTTAATTGGATTGGCTTCAGCAGTGCCATGGCTTCAAATCTTACCAATCAATCACGTAATATCTTCAGCAAAAAGCTCATGGTCCACAAAGAGGCACTGGACAACATCAATTTGTTCTCTGTAATTACCATCATTTCGTTTATCCTGCTGGTTCCCTCGGCTCTTCTCCTTGAAGGCACTAAATTTAGTCCTTCATACTTGAAATTAGCTGCAAATCAAGGGTTGAATATTAGAGAACTATGCATTAGGTTACTTCTATCTGGCATCTGTTTTCATAGTTATCAGCAGGTTTCATATTCAATACTACAAGAAATTTCACCGGTGACCCATGCAGTAGGAAATTCTTTGAAGCGAGTGGTGGTTATAGTGTCTTCGGTTATTTTCTTCCAAACAACAGTCTCACCTCTAAACGCCCTTGGAACGGGCATAGCTCTAATGGGAGTTTTCTTGTACTCAAGGGCTAAGCGTATGAACTCAAAACTCAAGTCTTTGTAA 1209 42.51 MWNNAVMALAISFSPNSIATATAAIPCPNRTPNFPHFSHILHFRSHESIPWRSSSSSSISGSSFGFTPRFEKFVVMAASSVPESAGEGVESVDLVQNLRLGAMFGIWYLLNIYYNIFNKQVLKAFPFPTTVTAFQFGCGTIIVNLMWALNFHHRPKISSSQFATILPLAVAHTMGNILTNVSLGRVAVSFTHTIKAMEPFFTVLLSALFLAERPSFWVVFSLVPVVGGVALASFTEASFNWIGFSSAMASNLTNQSRNIFSKKLMVHKEALDNINLFSVITIISFILLVPSALLLEGTKFSPSYLKLAANQGLNIRELCIRLLLSGICFHSYQQVSYSILQEISPVTHAVGNSLKRVVVIVSSVIFFQTTVSPLNALGTGIALMGVFLYSRAKRMNSKLKSL* 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22240296 22248184 + CsaV3_5G027270.1 Csa05g01908 530295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01908 402 SUPERFAMILY Multidrug resistance efflux transporter EmrE 146 235 - -
Csa05g01908 402 PANTHER PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC 41 396 - -
Csa05g01908 402 SUPERFAMILY Multidrug resistance efflux transporter EmrE 315 394 - -
Csa05g01908 402 Pfam Triose-phosphate Transporter family 98 390 IPR004853 -
Csa05g01908 402 PANTHER SOLUTE CARRIER FAMILY 35 41 396 - -
Csa05g01908 402 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 98 397 IPR004696 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00996 Csa-Chr3:8059633 Csa05g01908 Csa-Chr5:22240296 4.04E-70 dispersed
Csa05g01908 Csa-Chr5:22240296 Csa05g02508 Csa-Chr5:26685270 1.48E-64 dispersed
Csa01g00856 Csa-Chr1:5365097 Csa05g01908 Csa-Chr5:22240296 4.73E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01908 K15283 - csv:101217436 772.311