Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01916 ATGGAGAATCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACTGCTGGTCACCACCTTTGGGTTGTGATGCCTTACATGTCAGGAGGATCTTGTCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCTGATTTTGGAGTCTCAGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACGTTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACACGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCACTTGAATTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCGATGAAAGTTTTGCTAATGACACTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAAGAGATTTTCTAAGTCGTTCAAAGAAATGGTTGCTACATGCTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCTGAGAAGCTCCTAAAGCACCCTTTTTTTAAACATGCTCGTTCAGTTGATTACCTTACTCGAACAATCCTGGATGGCCTTGATCCATTAGGGGATCGCTTTAAGAAGCTAAAGGCAAAAGAGGCTGATCTTCTGGGACAAAACAAGGCTTTGTATGGGGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCAAACATAGAAGATCTAGATGTACATACTACACAACAAAGAAACAAGAATAATGAGTTTACCTTTCCGGTAGAGGGTTCATCCCTTGAAAGGCTGAGTCACCCTACTGCTGCAGCTAGTCAGGAGGATGGTTTCAATGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTTCCTATGAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACAGACAGTGTAAGGCCAGTGGATAGAGAAAATGGAAGAACTGAGGGTGAGAGTTCAGGGCAAAGTGGTTCTTTACCACGTCATTATATGTCAGAGAATAAGAGATCTTTCAGCGGTTCACTAATTTCTGACAATGCTGTATCTCCTAAAAAGATTACTGTAGACGGTGATAGGGACTATTTGCAGTCAAAACTTCCATCTGAGCGCAATTACAGTGGTCCACTATTATATCGCCAGAAAAGGGATACAAATAATGTTTCATCTGTTGAAGATTCATCAGATGGAACAGTTGTTCAGCGCAAGGGGCGGTTTAAAGTTACTTCAGCAGAGCTTAGTCCAAAGGGTCCTATGACGGGCTCATTTAGCCCAGTCTGTGGAGGGACAATAAGTCCAACATCTCTGAACCTCACACCTGCTCTACTCCTCCCATCAATGCAATGCATTTTGCAGCAGAACATCGTTCAACGGGAAGAAATTCTTAAACTGATCAAGTGTTTGGAACAAATGACTGGCAAGAATCCAGATGCATCAGAGTCGGTCACCAATGATCTTCTGCAGGTACCACCAACTTCCTTGAGGGAAAGAGAGTTGCAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATCATCTCGTTGAGGAATTAGAGAAGCAAAAATTGAAAAATGTCGAGTTTGAAAGACACGTGATTTCTATGGCAAATAAAGAGAAAACATAA 2016 41.67 MENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLTRTILDGLDPLGDRFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTQQRNKNNEFTFPVEGSSLERLSHPTAAASQEDGFNDLHDLESSLASFPMKPLEALKDCFDIYEDISTDSVRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKITVDGDRDYLQSKLPSERNYSGPLLYRQKRDTNNVSSVEDSSDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNIVQREEILKLIKCLEQMTGKNPDASESVTNDLLQVPPTSLRERELQSQVVHLQQRIDHLVEELEKQKLKNVEFERHVISMANKEKT* 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22320443 22333132 - CsaV3_5G027350.1 Csa05g01916 530303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01916 671 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Csa05g01916 671 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01916 671 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 669 - -
Csa05g01916 671 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01916 671 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 669 - -
Csa05g01916 671 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Csa05g01916 671 CDD STKc_OSR1_SPAK 14 277 - -
Csa05g01916 671 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01916 671 Coils Coil 627 661 - -
Csa05g01916 671 Gene3D Transferase(Phosphotransferase) domain 1 97 310 - -
Csa05g01916 671 MobiDBLite consensus disorder prediction 449 464 - -
Csa05g01916 671 MobiDBLite consensus disorder prediction 437 464 - -
Csa05g01916 671 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00090 Csa-Chr3:709022 Csa05g01916 Csa-Chr5:22320443 0 dispersed
Csa03g01242 Csa-Chr3:9531131 Csa05g01916 Csa-Chr5:22320443 2.45E-112 dispersed
Csa03g02963 Csa-Chr3:28193381 Csa05g01916 Csa-Chr5:22320443 0 dispersed
Csa05g01193 Csa-Chr5:12373260 Csa05g01916 Csa-Chr5:22320443 2.53E-62 dispersed
Csa05g01916 Csa-Chr5:22320443 Csa03g02841 Csa-Chr3:27159542 3.61E-43 dispersed
Csa05g01916 Csa-Chr5:22320443 Csa02g00036 Csa-Chr2:320884 7.97E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78257 PF00069 Pkinase 2.80E-60 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01916 K08835 - csv:101205102 1352.42