Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01916 ATGGAGAATCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACTGCTGGTCACCACCTTTGGGTTGTGATGCCTTACATGTCAGGAGGATCTTGTCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCTGATTTTGGAGTCTCAGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACGTTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACACGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCACTTGAATTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCGATGAAAGTTTTGCTAATGACACTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAAGAGATTTTCTAAGTCGTTCAAAGAAATGGTTGCTACATGCTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCTGAGAAGCTCCTAAAGCACCCTTTTTTTAAACATGCTCGTTCAGTTGATTACCTTACTCGAACAATCCTGGATGGCCTTGATCCATTAGGGGATCGCTTTAAGAAGCTAAAGGCAAAAGAGGCTGATCTTCTGGGACAAAACAAGGCTTTGTATGGGGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCAAACATAGAAGATCTAGATGTACATACTACACAACAAAGAAACAAGAATAATGAGTTTACCTTTCCGGTAGAGGGTTCATCCCTTGAAAGGCTGAGTCACCCTACTGCTGCAGCTAGTCAGGAGGATGGTTTCAATGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTTCCTATGAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACAGACAGTGTAAGGCCAGTGGATAGAGAAAATGGAAGAACTGAGGGTGAGAGTTCAGGGCAAAGTGGTTCTTTACCACGTCATTATATGTCAGAGAATAAGAGATCTTTCAGCGGTTCACTAATTTCTGACAATGCTGTATCTCCTAAAAAGATTACTGTAGACGGTGATAGGGACTATTTGCAGTCAAAACTTCCATCTGAGCGCAATTACAGTGGTCCACTATTATATCGCCAGAAAAGGGATACAAATAATGTTTCATCTGTTGAAGATTCATCAGATGGAACAGTTGTTCAGCGCAAGGGGCGGTTTAAAGTTACTTCAGCAGAGCTTAGTCCAAAGGGTCCTATGACGGGCTCATTTAGCCCAGTCTGTGGAGGGACAATAAGTCCAACATCTCTGAACCTCACACCTGCTCTACTCCTCCCATCAATGCAATGCATTTTGCAGCAGAACATCGTTCAACGGGAAGAAATTCTTAAACTGATCAAGTGTTTGGAACAAATGACTGGCAAGAATCCAGATGCATCAGAGTCGGTCACCAATGATCTTCTGCAGGTACCACCAACTTCCTTGAGGGAAAGAGAGTTGCAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATCATCTCGTTGAGGAATTAGAGAAGCAAAAATTGAAAAATGTCGAGTTTGAAAGACACGTGATTTCTATGGCAAATAAAGAGAAAACATAA 2016 41.67 MENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLTRTILDGLDPLGDRFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTQQRNKNNEFTFPVEGSSLERLSHPTAAASQEDGFNDLHDLESSLASFPMKPLEALKDCFDIYEDISTDSVRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKITVDGDRDYLQSKLPSERNYSGPLLYRQKRDTNNVSSVEDSSDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNIVQREEILKLIKCLEQMTGKNPDASESVTNDLLQVPPTSLRERELQSQVVHLQQRIDHLVEELEKQKLKNVEFERHVISMANKEKT* 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22320443 22333132 - CsaV3_5G027350.1 Csa05g01916 530303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01916 671 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Csa05g01916 671 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01916 671 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 669 - -
Csa05g01916 671 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01916 671 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 669 - -
Csa05g01916 671 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Csa05g01916 671 CDD STKc_OSR1_SPAK 14 277 - -
Csa05g01916 671 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01916 671 Coils Coil 627 661 - -
Csa05g01916 671 Gene3D Transferase(Phosphotransferase) domain 1 97 310 - -
Csa05g01916 671 MobiDBLite consensus disorder prediction 449 464 - -
Csa05g01916 671 MobiDBLite consensus disorder prediction 437 464 - -
Csa05g01916 671 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01916 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101205102 1352.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00090 Csa-Chr3:709022 Csa05g01916 Csa-Chr5:22320443 0 dispersed
Csa03g01242 Csa-Chr3:9531131 Csa05g01916 Csa-Chr5:22320443 2.45E-112 dispersed
Csa03g02963 Csa-Chr3:28193381 Csa05g01916 Csa-Chr5:22320443 0 dispersed
Csa05g01193 Csa-Chr5:12373260 Csa05g01916 Csa-Chr5:22320443 2.53E-62 dispersed
Csa05g01916 Csa-Chr5:22320443 Csa03g02841 Csa-Chr3:27159542 3.61E-43 dispersed
Csa05g01916 Csa-Chr5:22320443 Csa02g00036 Csa-Chr2:320884 7.97E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1350 . . Bda01g01279 Bda13g01619 Bpe02g01494 Bpe14g00247 . . . . . . . . Sed02g1388 . Cpe13g00900 Bhi06g00518 Tan11g0629 Cmetu09g0153 . . . . . . . . . . . Cone11ag0114 Cone18ag1363 . . Lsi02g01568 Csa05g01916 . . Blo17g00301 Blo18g00333 . . . . Bma01g00975 . . Cmo04g02836 Cmo15g00350 Cma04g02707 Cma15g00341 Car04g02610 Car15g00325 . Cpe01g02349 . . . . . . . Cla09g01858 Cam09g1954 Cec09g2018 Cco09g2111 . . . . . Chy09g00338 Cme09g00387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa04g02327 . 1 696 MAP Kinase Kinase Kinase Kinase AT1G53165 62.8 5.8e-223 770.8
Csa05g01193 . 270 530 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.1e-67 253.4
Csa04g02327 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 64.4 1.0e-230 796.6
Csa05g01193 . 270 530 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.4e-67 254.6
Csa05g01193 . 4 830 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 2.1e-240 828.9
Csa04g02327 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.4 6.3e-67 252.7
Csa05g01916 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.8 5.7e-255 877.1
Csa03g00090 . 7 719 MAP Kinase Kinase Kinase Kinase AT4G24100 64.3 3.0e-246 848.2
Csa03g00090 . 11 720 MAP Kinase Kinase Kinase Kinase AT4G10730 64.8 3.8e-246 847.8
Csa03g02963 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 61.7 2.1e-131 466.5
Csa03g00090 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 1.5e-118 423.7
Csa03g02963 . 1 680 MAP Kinase Kinase Kinase Kinase AT1G79640 58.7 6.2e-214 740.7
Csa05g01916 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 1.6e-102 370.2
Csa03g02963 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 7.3e-87 318.2
Csa03g00090 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 8.3e-75 278.1
Csa03g01242 . 32 497 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 2.6e-140 495.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78257 PF00069 Pkinase 2.80E-60 CL0016 Csa PK