Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01927 ATGGAGCTGACTACTCATGATCCTCCTATCCCCATCCCTATTCCTATCCCCTTAAATAGTCGTTACGCCGGTCACGACCATGACCACAACCATGACCATGACCATATCATCCACCACCATGACTCTTCTTCCACCCGTAACCATATCATTTCAGCTACTGTCAATGGTGGCAACCAAATGGAAGTGGATCTTCATCATCATACCAATAACAATAACAACAACAAGAAGCATATCAAATACAAAGAGTGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCCACAGACGGTTGCGGTGAGTTCATGCCAAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACTTGCTTGGCTTGCAATTGCCATAGAAACTTTCATCGAAAAGAGATCGAAGGAGAACCCTATGATTGGCTCCACCACTCCCGCCTTGGGCGAAAGCTTCTCGTAGGTGGGAAGAACATGATCGGCCCACCAGAGCCTGCAGCATTCGCATACCCAACTGCAGGAGGGGCGACGTTCATATCATCCAGAGCTGCAACAACGCAACCCCACCACATGATAATGTCATACAACATGCTGGGTGGGGGCGGTGGGCACTCGGAGTCAGAGGAGCAGGAGGAAGGAATGGGAGCAGGAGTTGGGGGAAGGGTCTATTCGGGGGCGATGATGAATAAGAAACGATTCCGAACGAAGTTCACGGCGGAGCAAAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAACAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAAGTTTGGATGCACAACAACAAGCACAATCTTGCCAAGAAAGATACAATGTCACCTTCTCATTCTCCTAATAATCCTTTAAATTAA 906 47.68 MELTTHDPPIPIPIPIPLNSRYAGHDHDHNHDHDHIIHHHDSSSTRNHIISATVNGGNQMEVDLHHHTNNNNNNKKHIKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCLACNCHRNFHRKEIEGEPYDWLHHSRLGRKLLVGGKNMIGPPEPAAFAYPTAGGATFISSRAATTQPHHMIMSYNMLGGGGGHSESEEQEEGMGAGVGGRVYSGAMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDTMSPSHSPNNPLN* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22469732 22471636 - CsaV3_5G027460.1 Csa05g01927 530314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01927 301 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 79 130 IPR006456 -
Csa05g01927 301 SUPERFAMILY Homeodomain-like 218 286 IPR009057 -
Csa05g01927 301 MobiDBLite consensus disorder prediction 22 44 - -
Csa05g01927 301 Pfam ZF-HD protein dimerisation region 78 130 IPR006456 -
Csa05g01927 301 Gene3D - 214 287 - -
Csa05g01927 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 80 129 IPR006456 -
Csa05g01927 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 27 287 - -
Csa05g01927 301 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 225 281 IPR006455 -
Csa05g01927 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 27 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01927 - - - csv:101218143 540.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00741 Csa-Chr1:4706303 Csa05g01927 Csa-Chr5:22469732 9.88E-39 dispersed
Csa03g03844 Csa-Chr3:33868099 Csa05g01927 Csa-Chr5:22469732 2.95E-53 dispersed
Csa05g01927 Csa-Chr5:22469732 Csa06g03243 Csa-Chr6:27375407 1.18E-53 dispersed
Csa05g01927 Csa-Chr5:22469732 Csa06g03128 Csa-Chr6:26710896 2.44E-59 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g03128 . 37 231 ZF-HD Transcription Factor Family AT4G24660 51.3 1.0e-46 183.7
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT2G02540 52.8 5.4e-51 198.4
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT1G14440 54.1 9.9e-53 204.1
Csa03g03844 . 12 299 ZF-HD Transcription Factor Family AT5G15210 52.7 5.2e-50 194.9
Csa05g02983 . 6 255 ZF-HD Transcription Factor Family AT5G15210 52.0 4.9e-48 188.3
Csa03g03844 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.7 1.3e-60 230.3
Csa05g02983 . 16 257 ZF-HD Transcription Factor Family AT3G28920 62.5 1.7e-57 219.9
Csa03g03844 . 30 263 ZF-HD Transcription Factor Family AT5G39760 64.9 3.2e-49 192.6
Csa05g02983 . 24 261 ZF-HD Transcription Factor Family AT5G39760 57.3 4.2e-49 192.2
Csa05g02983 . 57 258 ZF-HD Transcription Factor Family AT1G69600 51.5 2.8e-47 185.7
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT2G02540 52.8 5.4e-51 198.4
Csa06g03128 . 37 231 ZF-HD Transcription Factor Family AT4G24660 51.3 1.0e-46 183.7
Csa03g03844 . 30 263 ZF-HD Transcription Factor Family AT5G39760 64.9 3.2e-49 192.6
Csa05g02983 . 24 261 ZF-HD Transcription Factor Family AT5G39760 57.3 4.2e-49 192.2
Csa05g02983 . 57 258 ZF-HD Transcription Factor Family AT1G69600 51.5 2.8e-47 185.7
Csa03g03844 . 12 299 ZF-HD Transcription Factor Family AT5G15210 52.7 5.2e-50 194.9
Csa05g02983 . 6 255 ZF-HD Transcription Factor Family AT5G15210 52.0 4.9e-48 188.3
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT1G14440 54.1 9.9e-53 204.1
Csa03g03844 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.7 1.3e-60 230.3
Csa05g02983 . 16 257 ZF-HD Transcription Factor Family AT3G28920 62.5 1.7e-57 219.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31773 PF04770 ZF-HD_dimer 6.30E-29 No_clan Csa TF