Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01927 ATGGAGCTGACTACTCATGATCCTCCTATCCCCATCCCTATTCCTATCCCCTTAAATAGTCGTTACGCCGGTCACGACCATGACCACAACCATGACCATGACCATATCATCCACCACCATGACTCTTCTTCCACCCGTAACCATATCATTTCAGCTACTGTCAATGGTGGCAACCAAATGGAAGTGGATCTTCATCATCATACCAATAACAATAACAACAACAAGAAGCATATCAAATACAAAGAGTGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCCACAGACGGTTGCGGTGAGTTCATGCCAAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACTTGCTTGGCTTGCAATTGCCATAGAAACTTTCATCGAAAAGAGATCGAAGGAGAACCCTATGATTGGCTCCACCACTCCCGCCTTGGGCGAAAGCTTCTCGTAGGTGGGAAGAACATGATCGGCCCACCAGAGCCTGCAGCATTCGCATACCCAACTGCAGGAGGGGCGACGTTCATATCATCCAGAGCTGCAACAACGCAACCCCACCACATGATAATGTCATACAACATGCTGGGTGGGGGCGGTGGGCACTCGGAGTCAGAGGAGCAGGAGGAAGGAATGGGAGCAGGAGTTGGGGGAAGGGTCTATTCGGGGGCGATGATGAATAAGAAACGATTCCGAACGAAGTTCACGGCGGAGCAAAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAACAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAAGTTTGGATGCACAACAACAAGCACAATCTTGCCAAGAAAGATACAATGTCACCTTCTCATTCTCCTAATAATCCTTTAAATTAA 906 47.68 MELTTHDPPIPIPIPIPLNSRYAGHDHDHNHDHDHIIHHHDSSSTRNHIISATVNGGNQMEVDLHHHTNNNNNNKKHIKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCLACNCHRNFHRKEIEGEPYDWLHHSRLGRKLLVGGKNMIGPPEPAAFAYPTAGGATFISSRAATTQPHHMIMSYNMLGGGGGHSESEEQEEGMGAGVGGRVYSGAMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDTMSPSHSPNNPLN* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22469732 22471636 - CsaV3_5G027460.1 Csa05g01927 530314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01927 301 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 79 130 IPR006456 -
Csa05g01927 301 SUPERFAMILY Homeodomain-like 218 286 IPR009057 -
Csa05g01927 301 MobiDBLite consensus disorder prediction 22 44 - -
Csa05g01927 301 Pfam ZF-HD protein dimerisation region 78 130 IPR006456 -
Csa05g01927 301 Gene3D - 214 287 - -
Csa05g01927 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 80 129 IPR006456 -
Csa05g01927 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 27 287 - -
Csa05g01927 301 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 225 281 IPR006455 -
Csa05g01927 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 27 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00741 Csa-Chr1:4706303 Csa05g01927 Csa-Chr5:22469732 9.88E-39 dispersed
Csa03g03844 Csa-Chr3:33868099 Csa05g01927 Csa-Chr5:22469732 2.95E-53 dispersed
Csa05g01927 Csa-Chr5:22469732 Csa06g03243 Csa-Chr6:27375407 1.18E-53 dispersed
Csa05g01927 Csa-Chr5:22469732 Csa06g03128 Csa-Chr6:26710896 2.44E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31773 PF04770 ZF-HD_dimer 6.30E-29 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01927 - - csv:101218143 540.806