Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01946 ATGGATGAAAATGGTGGGATCAAGATGGGAATCCGCCAGATTGTGAGGCTGAAAGAGACTCTCCAACACTGGCAAGGGGTCACAGTATGCCCGAAATCCAAAGCAGCAGCCCATGAAAACGGAAGCCAAAATCAAAATCAAAATCATGGGATCCTTTCACCGGCAATCAACAAAAGGCTGACGAATGTGTTGTGTTGTGATTCGGATGAGGAGACTTGCCAGAGCCCTGAGCACCCACCCGATGTTCCGAAAGGGTACTTGGCTGTTTATGTTGGGCCGGAGCTTCGGAGGTTTATCATTCCGACCAGCTATCTTAGGCATTCGGTGTTTAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTTTGGATTCGATCATAGCGGCGCGCTCACTTTTCCTTGCGAAATCGAGATCTTCAAATACCTTCTCAAGTGCATGGAGAGCCAGCAGAAGGATCATCCTGATGACCACACCCCAGCTGAGAGTTCGATGACTATGGAAGAATAA 504 48.81 MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRLTNVLCCDSDEETCQSPEHPPDVPKGYLAVYVGPELRRFIIPTSYLRHSVFKVLLEKAEEEFGFDHSGALTFPCEIEIFKYLLKCMESQQKDHPDDHTPAESSMTMEE* 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22694490 22697221 + CsaV3_5G027650.1 Csa05g01946 530333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01946 167 PANTHER BNAA02G05090D PROTEIN 6 157 - -
Csa05g01946 167 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 157 IPR003676 GO:0009733
Csa05g01946 167 Pfam Auxin responsive protein 68 144 IPR003676 GO:0009733
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01946 Csa-Chr5:22694490 Csa07g02273 Csa-Chr7:21174391 1.91E-23 dispersed
Csa05g01946 Csa-Chr5:22694490 Csa02g01321 Csa-Chr2:12856450 2.81E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01946 K14488 - csv:101207913 351.288