Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa05g01961 | ATGGACCCTATGGAGAGGGCAAATTTTAGGCACACTGCTTCTACAATTACTGTCTTTGCTCATATTTTTGGTCTCACTGCCTGCATTCTTACCCTTGTTTGGTTGCTGCATTATCGTGGCGGCCTTGCCTACGATTCTCCCAATTCCAACCTTGTTTTCAATTGTCACCCATTCTTCATGCTCCTCGGTTTCGTGTTCATGTCGGGGGAAGCAATGATGGCCTACAGGACAGTGAGGGCAGAAAAGAGAACAAAGAAGATAGTTCACATGGCTCTTCATTTGGTAGCTATTTGCATGGGAATTATAGGGATAAATGCTGCTTTCAAATTTCATGATCAAGTGAACTTGGAGGATATGTATAGTTTACATTCATGGATTGGTATAGTCACTTTTTGCCTTTACGGTTTACAGTGGGTGGTGGGACTATTTACATTCTTGTTTCCAGGAGCAGATCGAGAGACTAAAACTAGGTTGCTACCATGGCATATAACTGGGGGAAGAGCTCTACTATTGATGATAATATGCACTGCGTTGACTGGCTTGTCTGAGAAGGCTACTTCTTTGAGACTGACTAGCAGCCACGAGTCCCGTTTGCTTAACTTCACTGCTTTCTTCGTCCTCCTCTTTGGCATTTCCATCGATATCTCCATCGGTTTTGCTCGATTTATGCACGTTGATCACACCATTTAG | 690 | 43.48 | MDPMERANFRHTASTITVFAHIFGLTACILTLVWLLHYRGGLAYDSPNSNLVFNCHPFFMLLGFVFMSGEAMMAYRTVRAEKRTKKIVHMALHLVAICMGIIGINAAFKFHDQVNLEDMYSLHSWIGIVTFCLYGLQWVVGLFTFLFPGADRETKTRLLPWHITGGRALLLMIICTALTGLSEKATSLRLTSSHESRLLNFTAFFVLLFGISIDISIGFARFMHVDHTI* | 230 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 22992737 | 22994487 | + | CsaV3_5G027800.1 | Csa05g01961 | 530348 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa05g01961 | 229 | CDD | Cyt_b561_ACYB-1_like | 46 | 188 | - | - | |
| Csa05g01961 | 229 | ProSiteProfiles | Cytochrome b561 domain profile. | 19 | 218 | IPR006593 | - | |
| Csa05g01961 | 229 | PANTHER | TRANSMEMBRANE ASCORBATE FERRIREDUCTASE 3-RELATED | 1 | 220 | - | - | |
| Csa05g01961 | 229 | Gene3D | - | 9 | 219 | - | - | |
| Csa05g01961 | 229 | SMART | 561_7 | 55 | 181 | IPR006593 | - | |
| Csa05g01961 | 229 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 28 | - | - | |
| Csa05g01961 | 229 | PANTHER | CYTOCHROME B561-RELATED | 1 | 220 | IPR043205 | GO:0016491 | |
| Csa05g01961 | 229 | Pfam | Eukaryotic cytochrome b561 | 56 | 186 | IPR006593 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g04686 | Csa-Chr3:40719163 | Csa05g01961 | Csa-Chr5:22992737 | 2.03E-60 | dispersed | |
| Csa05g01215 | Csa-Chr5:12694238 | Csa05g01961 | Csa-Chr5:22992737 | 3.14E-55 | dispersed | |
| Csa05g01961 | Csa-Chr5:22992737 | Csa05g02570 | Csa-Chr5:27054633 | 3.79E-31 | dispersed | |
| Csa05g01961 | Csa-Chr5:22992737 | Csa05g03088 | Csa-Chr5:30889864 | 9.24E-54 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa05g01961 | K08360 | - | csv:101208884 | 468.003 |