Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01962 ATGTTCGAGGCCAAAGATCTCGCCTCCGATGGCGAGAACTCTCGAACCAAGCTTTTGCGCCATGTTTCTGACCGTTTCAGAGACAATTCCGATTCCAAATCTGGGTTTTCCGACAAGGGTGTTCTTGGTTTTCGGGAAGAACAATCGAAATCTGCTCGAATCGGGAACTCGGGTTCTCAAGAACTCACACTTAGCTACCTTTGTGAGAAGGACAAGGGTTTTGCGTCTTCTTCCTTCGATAAAGGTAATTACAAAGGTAAGGAAGTTTTGTTTTCTGATAATACTAACGAAGATGATAAATGGGTTGAGAGGGATTTCCTTAATTTGAACTCGCATAGGGGAAACCAGTCGAAGCGGGAGGTTGAGGATGAAATTGAAAGGGAGAATCGAGGAAAGAAGCCTAAGCTTGAAACTCTTAATCTTTCTTTAGCTTTACCTGAAGTTTCACTTTCTCTTACTGCTTCAAATGCTTTGCAAAATGAAGATCCTCCCCCTGTTCGATCAAAGCCCTGTAGGAGCCACCAATCTTTAGCTCCTTCAATGAACAACACCCAAACTACTTGTTCTAACGATTTCACTGCTGCTTCGCTTTCCTATTCCTATTCCCACCAATTTTCTCACAACCCCAGTTGCTCGTTGACGCGAAATTCGACTGAGAATTACGAGTATTCTGTTGGGAGAGACGACCATATTTGGAACTGTGGAGAGGGAACTAATGGGTCTGTTCATAGCAGGTTCAAACCATTAGGGGATGGGGGGGTTGCCTTGTCAAATCATGGAGGTGGGCTTAATTCTTTGTTGCAGGGGAGTCGCCCTTTGAATAAGGAGATATGTAATAACTCTGATGAGCACTCGTTCTTTCCGTCGGAGCTTCCGGCTAGACCGAGAACAGAGGTGAAGTCAGGGAATTCGATTGGAAGGGGATCAGAAAATTTGAAGGGGGTAGAGGGTATTGGTAGGCCGGAGAGAATTCTTCGTGAAATCGTTTCGGAGTCAATTTCAATCATGTCTCAGATAGTTCAGGAGCTTCCTGAGGAAACACTTTCATCAATCAAAGATTACTTGAAAGATCTGATTGCTATGCCTGAAAAGAGAGACGAATTATCCACTCTACAAAAAAGATTAGAGCGAAGATCTGATCTAACGAAGGAAACTCTTTCAAAGTGTCACAAAGCACAGCTTGAAATTTTAGTATCAGTGAAGATGGGGCTTGCAAGTTTCATCTCAGGAAAAAGCAGATGCCCCATTTCTGAGCTTGTGGACATTTTCTTGTTTCTGAAATGTAGGAACTGCAAGAGTGTTATCCCAGTTGATGATTGTGACTGCAAAATCTGCTCAGCCAACAAGGGGTTTTGCAGTTCATGTATGTGCCCCATCTGTTTGAACTTCGATTGTGCAAACAATACTTGTAGTTGGGTTGGTTGTGATGTTTGCTCCCATTGGTGTCATGCTGCTTGTGGGATTGAGAAGAATCTCATCCGGCCTGGTCCAAGCCTCAAAGGTCCATCGGGGACAACAGAGATGCAGTTTCATTGCATTGCTTGTAATCATGCTTCAGAGATGTTTGGATTTGTGAAGGATGTTTTTGTGTACTGTGCAAAGAACTGGGGTCTTGAAACCTTAATGAAGGAGCTTGAGTGTGTGAAGAGGATCTTTATTGGAAGTGATGACTACAAAGGCAAGGATTTGTATATTAAAGCTGCTCAGATGCTGGCCAAGCTTGAAAGGAAAGCAATTGACCCTTGGGAGGCCTGCAATATCATTCTTAAGTACTTCAATTATGGTACATCAGAGATTTCAACTTCTGAGGTATTCTCGGAGAAGTTAGGAAGAACCGATATGACCAGCCTGGAGATTTCTACTTCTGAGGTATTCTCAGAGAAGTTAGGAACAACCGATATGGCCAGCCTGTCAAAAGATGGGATGTCTCTTCCTCAAACGGCTTCCCTACCTTCAACATACGTCATGCAGAAAAACACCCCATCTAGGCCACATCGCGACTTGATCTCTGGCGATCTTCGAAGGAGCGCTCTCAAAGTCTCCATCGCCAGTAACTTGAATGTAGACGACGAGTTCCAATTGGGGGCTTTGACAAAAAAAGAAGGCCTTGAAAGCTTAGAAAGCATTGTAAGAATCAAGAAAGCAGAGGCAGGAATGTTTCAGAACAAGGCAGATGAGGCACGGAGAGAGGCCGAACGACTGAGACAAATAATCATTGCAAAGACAGAGAAACTCGATGAAGACTATGCCGAAAAGATCGGGAAATTGTGCTTGAAAGAGGCGGAAGATAGGCGGAGGAAGAAGTTGGAGGAGCTGAAAGTATTGGAGAACTCGCAAATAGATTATTACAACATGAAGAAGAGAATGCAGAAGGAGATATCTGGGTTGTTGGAAAGAATGGAAGTAACAAAGAAGCAAATAGTGTGA 2427 43.63 MFEAKDLASDGENSRTKLLRHVSDRFRDNSDSKSGFSDKGVLGFREEQSKSARIGNSGSQELTLSYLCEKDKGFASSSFDKGNYKGKEVLFSDNTNEDDKWVERDFLNLNSHRGNQSKREVEDEIERENRGKKPKLETLNLSLALPEVSLSLTASNALQNEDPPPVRSKPCRSHQSLAPSMNNTQTTCSNDFTAASLSYSYSHQFSHNPSCSLTRNSTENYEYSVGRDDHIWNCGEGTNGSVHSRFKPLGDGGVALSNHGGGLNSLLQGSRPLNKEICNNSDEHSFFPSELPARPRTEVKSGNSIGRGSENLKGVEGIGRPERILREIVSESISIMSQIVQELPEETLSSIKDYLKDLIAMPEKRDELSTLQKRLERRSDLTKETLSKCHKAQLEILVSVKMGLASFISGKSRCPISELVDIFLFLKCRNCKSVIPVDDCDCKICSANKGFCSSCMCPICLNFDCANNTCSWVGCDVCSHWCHAACGIEKNLIRPGPSLKGPSGTTEMQFHCIACNHASEMFGFVKDVFVYCAKNWGLETLMKELECVKRIFIGSDDYKGKDLYIKAAQMLAKLERKAIDPWEACNIILKYFNYGTSEISTSEVFSEKLGRTDMTSLEISTSEVFSEKLGTTDMASLSKDGMSLPQTASLPSTYVMQKNTPSRPHRDLISGDLRRSALKVSIASNLNVDDEFQLGALTKKEGLESLESIVRIKKAEAGMFQNKADEARREAERLRQIIIAKTEKLDEDYAEKIGKLCLKEAEDRRRKKLEELKVLENSQIDYYNMKKRMQKEISGLLERMEVTKKQIV* 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22994625 22999350 - CsaV3_5G027810.1 Csa05g01962 530349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01962 808 MobiDBLite consensus disorder prediction 1 40 - -
Csa05g01962 808 MobiDBLite consensus disorder prediction 115 133 - -
Csa05g01962 808 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 807 IPR004082 -
Csa05g01962 808 Pfam PHD - plant homeodomain finger protein 429 550 IPR032881 -
Csa05g01962 808 MobiDBLite consensus disorder prediction 157 179 - -
Csa05g01962 808 PANTHER PROTEIN OBERON 3 1 807 - -
Csa05g01962 808 MobiDBLite consensus disorder prediction 113 133 - -
Csa05g01962 808 Coils Coil 786 806 - -
Csa05g01962 808 Coils Coil 717 744 - -
Csa05g01962 808 CDD PHD_OBE1_like 456 515 - -
Csa05g01962 808 Pfam Coiled-coil region of Oberon 682 797 IPR032535 -
Csa05g01962 808 Coils Coil 758 778 - -
Csa05g01962 808 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 339 361 IPR004082 -
Csa05g01962 808 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 378 393 IPR004082 -
Csa05g01962 808 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 393 408 IPR004082 -
Csa05g01962 808 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 419 440 IPR004082 -
Csa05g01962 808 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 463 483 IPR004082 -
Csa05g01962 808 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 536 555 IPR004082 -
Csa05g01962 808 MobiDBLite consensus disorder prediction 285 314 - -
Csa05g01962 808 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01962 - - - csv:101209125 1605.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01962 Csa-Chr5:22994625 Csa07g02002 Csa-Chr7:19561469 2.69E-125 dispersed
Csa05g01962 Csa-Chr5:22994625 Csa07g00265 Csa-Chr7:2045862 1.09E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g536 . . . . . Bpe10g01008 Bma14g01925 Bma15g00021 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0340 Cone9ag0374 . Csa05g01962 . . Blo06g01035 . Bda07g01736 . . . . . . . . Cma04g01801 . . . . . . . . . . . . . . . . . . . . . . Cme09g01299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005873 3 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 39