Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01966 ATGGGTATGAAAATGCAGCAGAGCAACTACTCTGCGGCTATGAAGTGGAATGAGCAAATGGGAACGACAAAGAAGGGTTACACATTTGTTCAAGCTAATAGGGCTTGGCTTAGAAAGTATCTTCTGTTTTGGATTATGGGGATGGCGTTTATCAGCATGTTAATTTATAATGGCATGGATGCTGATAATAAAGTGAGGAGGAACGAAGTTTTGGGAAGCATGTGTGAGCAGAGAGCAAGGATGTTGCAGGATCAATTCAGTGTTAGTGTTAACCATGTTCATGCGTTGGCTGTTCTTGTTTCCACCTTTCATTACTTCAAAAACCCTTCTGCTATTGATCAGGAAACTTTTGCAGAATACACAGCCAGAACTGCTTTTGAACGACCTCTACTCAGTGGGGTGGCGTATGCACAAAGAGTGATTCATTCAGAGAGGGATATCTTCGAAAAGCAACATGGATGGATGATAAAAACAATGAAAAGGGAACCTTCACCAATTCGAGATGAATATGCGCCAGTAATATTTTCTCAAGAAACAGTCTCGTATATTGAATCACTGGATATGATGTCAGGAGAGGAGGACCGTGAAAATATTTTAAGGGCTAGAGCAACAGGAAAGGCTGTTTTGACAAGCCCCTTCAGGCTACTGGGTTCTCATCATCTTGGAGTTGTTTTGACGTTTCCTGTTTACAAATCCAAATTGCCATCTAAACCAACTGAAGAAGATCGGATTGAAGCAACAGCAGGCTACGTTGGTGGAGCCTTTGATGTTGAGTCACTCGTGGAAAACTTGCTTGGGCAGCTTGCAGGGAACCAGGCCATTTTGGTAAATGTATATGATGTCACAAACTCTTCTGATCCCCTCGTCATGTATGGTCATCAATATCAAGATGGTGACTTGTCTCTTTTGCATGAGAGTAGCCTTGATTTTGGAGATCCATTCAGGAAGCATTTGATGATTTGTAGATATCAGCAGAGGGCTCCCACATCCTGGACTGCTCTGACTACTGCATTCTTATTCTTTGTGATCGGGTTGTTAGTTGGATACATTTTGTATGGTGCAGCAACTCATATTCTGAAGGTTGAAGATGATTTTCATGCGATGCAAATACTGAAAGTTCGGGCAGAGGCTGCTGATATAGCAAAATCTCAGTTTCTTGCAACTGTTTCTCACGAAATTAGGACACCAATGAATGGCATCCTCGGAATGCTCGCACTGCTTCTGGATACAGATTTAAGTTCTACTCAGAAAGATTATGCTCAGACTGCTCAGGCTTGTGGAAAGGCACTGATAGCATTAATAAATGAGGTTCTTGACCGGGCAAAAATTGAAGCTGGAAAGTTAGAACTGGAAGCAGTTCCATTTGACATTCGATCAATACTCGATGATGTGCTATCTTTATTTTCCGAGAAGTCTAGACAAAAGGGTCTGGAGCTGGCAGTTTTTGTTTCTGATAAAGTTCCAGAAATTGTTATTGGAGACCCCGGAAGATTCAGACAAATTATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTGAAAGGGGACATATATTTGTTAAAGTGCACCTAGCTGAGCACTCAAAAGGCTCCATTGACTCAAAATATGTCAATGGAATATCTGACAGTGACTTATTCATATCGGGTGGTCGTGACTTTCAAACTTTGAGTGGATGTGAGGCAGCAGATGATCAGAATGGCTGGGATAACTTTAAACATATAATAGCTGATGAGGACTTCCAGTTGAATGCCACTCCAAACAGCATGGTAGTTGCCAACGAGGGTTGTGGTCATGTTACTTTGATGGTAAGTGTGGAGGATACTGGAATTGGGATTCTCTTACATGCCCAAAATCGAGTTTTCATGCCCTTCATGCAAGCAGATAGCTCAACCTCCCGAAATTATGGGGGTACTGGTATCGGCTTAAGTATCAGTAAATGTTTAGTTGAACTAATGGGTGGTCAGATAAACTTCATAAGCCGGCCTCAGATAGGAAGCACGTTTTCCTTCACTGCTGTATTTGGAAAATGTAAGAAAAACTCAATCAACGATTTGAAAAAACCGAACTCTGAAGAACTTCCCCCCAGTTTTAGAGGAATGAAAGCCATCATAGTTGACAGGAAACATGTTAGAGCTTCTGTAACCAGGTATCATTTGAAGAGACTTGGTATTAAAGTTGAAGTAACCAGTAGCGTCAACATGGCAGCTTCTTTATCCAGAGAAAATGGATCCACAATACCAGGAAACGCAATCCTTCCAGATATGATCTTAGTTGAAAAGGATACGTTAAATTCAGACGAGGAATGTGGGACCATTCATCAATTGAACTTGAAACTGAACGGGAATTCGTTTAAGTTACCGAAGTTGATCCTTCTTGCTACAAATATTACTACTGCAGAGCTAGACAAGGCAAAAGCAGTAGGTTTTGCCGACACTGTGATCATGAAACCGTTGAGGGCCAGTATGGTGGCAGCCTGTCTGCAACAAGTACTCGGGGTTAAGAATCAGAGACGGGGAAGAGGCGTACCTAACGGTTCTGCTTTCCTTCAGAGCCTTCTCTGTGGCAAGAGAATTTTAATTGTTGATGACAATAGGGTAAACCGTAGGGTTGCTGCAGGCGCTCTGAAGAAATTCGGTGCAGATGTTGAGTGTGCAGATAGCGGGAAAGCTGCTCTGAAGTTGCTTCAGCTACCTCACAATTTCGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCGACTCGTCTGATCAGGATGATGGAGAACAAGGAAAACGAAGGGGAATCGTATGCAGGAGAAGGCAAGTGGCATATGCCAATATTAGCAATGACTGCAGATGTGATTCATGCTACGTATGACGAATGCCTGAAATGTGGAATGGATGGCTATGTCTCGAAACCCTTTGAGGAAGAAAATCTATACAAAGAAGTTGCCAAGTTTTTTAAAAAACCGTAG 2970 42.09 MGMKMQQSNYSAAMKWNEQMGTTKKGYTFVQANRAWLRKYLLFWIMGMAFISMLIYNGMDADNKVRRNEVLGSMCEQRARMLQDQFSVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEKQHGWMIKTMKREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSKPTEEDRIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDLSLLHESSLDFGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHILKVEDDFHAMQILKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAEHSKGSIDSKYVNGISDSDLFISGGRDFQTLSGCEAADDQNGWDNFKHIIADEDFQLNATPNSMVVANEGCGHVTLMVSVEDTGIGILLHAQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVFGKCKKNSINDLKKPNSEELPPSFRGMKAIIVDRKHVRASVTRYHLKRLGIKVEVTSSVNMAASLSRENGSTIPGNAILPDMILVEKDTLNSDEECGTIHQLNLKLNGNSFKLPKLILLATNITTAELDKAKAVGFADTVIMKPLRASMVAACLQQVLGVKNQRRGRGVPNGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDACFMDIQMPEMDGFEATRLIRMMENKENEGESYAGEGKWHMPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYKEVAKFFKKP* 990
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 23031938 23038293 + CsaV3_5G027850.1 Csa05g01966 530353
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01966 989 Coils Coil 431 451 - -
Csa05g01966 989 PANTHER TWO-COMPONENT HISTIDINE KINASE 22 988 - -
Csa05g01966 989 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 435 671 IPR036890 -
Csa05g01966 989 ProSiteProfiles CHASE domain profile. 108 320 IPR006189 -
Csa05g01966 989 Gene3D - 354 444 - -
Csa05g01966 989 ProSiteProfiles Response regulatory domain profile. 701 831 IPR001789 GO:0000160
Csa05g01966 989 PANTHER HISTIDINE KINASE 4 22 988 - -
Csa05g01966 989 SUPERFAMILY CheY-like 855 985 IPR011006 -
Csa05g01966 989 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 368 447 IPR036097 GO:0000155|GO:0007165
Csa05g01966 989 CDD HisKA 381 442 IPR003661 GO:0000155|GO:0007165
Csa05g01966 989 Gene3D CHASE domain 112 327 IPR042240 -
Csa05g01966 989 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 493 673 IPR003594 -
Csa05g01966 989 Pfam His Kinase A (phospho-acceptor) domain 381 446 IPR003661 GO:0000155|GO:0007165
Csa05g01966 989 Gene3D - 59 111 - -
Csa05g01966 989 SMART HKATPase_4 493 676 IPR003594 -
Csa05g01966 989 ProSiteProfiles Response regulatory domain profile. 857 986 IPR001789 GO:0000160
Csa05g01966 989 PRINTS Bacterial sensor protein C-terminal signature 601 615 IPR004358 GO:0016310|GO:0016772
Csa05g01966 989 PRINTS Bacterial sensor protein C-terminal signature 619 629 IPR004358 GO:0016310|GO:0016772
Csa05g01966 989 PRINTS Bacterial sensor protein C-terminal signature 636 654 IPR004358 GO:0016310|GO:0016772
Csa05g01966 989 PRINTS Bacterial sensor protein C-terminal signature 660 673 IPR004358 GO:0016310|GO:0016772
Csa05g01966 989 ProSiteProfiles Histidine kinase domain profile. 388 676 IPR005467 -
Csa05g01966 989 CDD REC_hyHK_CKI1_RcsC-like 858 982 - -
Csa05g01966 989 SMART REC_2 856 982 IPR001789 GO:0000160
Csa05g01966 989 Pfam Response regulator receiver domain 858 982 IPR001789 GO:0000160
Csa05g01966 989 Gene3D - 851 988 - -
Csa05g01966 989 CDD HATPase_EvgS-ArcB-TorS-like 498 674 - -
Csa05g01966 989 SUPERFAMILY CheY-like 696 833 IPR011006 -
Csa05g01966 989 Gene3D - 445 678 IPR036890 -
Csa05g01966 989 SMART CHASE_2 108 293 IPR006189 -
Csa05g01966 989 SMART HisKA_10 381 446 IPR003661 GO:0000155|GO:0007165
Csa05g01966 989 Pfam CHASE domain 111 291 IPR006189 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Csa05g01966 Csa05g00994 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00994 Csa-Chr5:9280299 Csa05g01966 Csa-Chr5:23031938 0 dispersed
Csa05g01966 Csa-Chr5:23031938 Csa06g00827 Csa-Chr6:6644259 0 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31776 PF02518 HATPase_c 3.00E-31 CL0025 Csa TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01966 K14489 - csv:101209777 1945.24