Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01967 ATGAGGAAACCCCATTTCGGTTTTGGGGTTTTTCTCTTGCTTTTCCCCTTGTTTCTGCACTTTCTGGGGTTCTCTGTTTTTGCTCAGCCGGCCGCCGGTGGTGCTGGTGATGGGTCAGTCATGAATCTCTTGAAGAATAGTGTTGGAGCTCCGAGTTCTCTTGGATGGACTGGTTCGGATTACTGTCAATGGAACCATGTCAAATGTGATTCTCAGAGCCGAGTTGTTAAAATCCAAATTGGGAATCAAAACCTCAAAGGATCACTTCCGAAGGAGCTTTTCAGTCTCTCCGCGTTAGTGCAATTAGAGGTACAGAGCAACCAGTTGGGTGGGCCCTTCCCTAACCTCGCCGATTCTCTTCAGATACTTCTAGCGCATGATAATCTTTTTACTTCCATGCCTGCTGATTTCTTCGCCAAGAAGTCGGCTCTGCAAACCATAGATATCGACAACAATCCCTTCTCGGCGTGGCAGATTCCTGATAATATTCGAGATGCATCTGCGTTACAGCAATTATCGGCCAATCGTGTCAACATCACCGGTATAATCCCTGGAATTTTCGATGGCGCAACGTTTCCGACTCTTACGAACTTGCATTTGGCGGGTAATTTTCTTGAAGGGGAATTACCAGCAAGTCTTGCAGGTTCTTCGATTCAGTCGCTTTGGTTGAATGGACAACAGAGTAGTTCTAAGTTAAACGGTTCAATCGCCATATTGCAAAATATGACTAATCTGCAGGAGGTTTGGTTGCATATGAACCAGTTTTCAGGTCCTTTGCCGGATTTCTCCAATCTTCAGGGATTAGCGAAATTGAGTTTGAGGGATAATCAGCTTACGGGTATTGTTCCTTCATCCTTGGTAAATTTGAAATCTCTCATGGTTGTGAATTTGACCAATAATTTGCTTCAAGGACCAACTCCTGCTTTTGATCCTAATGTTCAGCTGGATATGAAACCACAAACGAACAAGTTTTGCTTGGATTCTCCGGGTGAACCATGTGATCCCCGAGTGAATGCTTTGTTATCAGTTGCAGAGTCCATGGGTTTTCCCACAGCCTTTGCACAAGGCTGGGCAGGGAACGATCCCTGTCAGGGTTTCAAGGGTATTTCATGTATTGGCAACCCTACAAACATAAGTGTAATTAACTTAAAAAATATGGGTCTTGCAGGCTCTATTTCTCCTAGCTTTTCATTGCTTACATCCGTGCAAAAGTTGTTTCTCTCTAACAATTTTCTATCTGGCACAATACCGAATGAACTTGCGACTATGCCTAGTCTTACAGAATTAGATGTCTCCAATAACAGGCTTCATGGGAAAGTTCCAGTCTTCAGGAAGAATGTGATTGTCAACACCCAGGGGAACCCGGATATTGGGAAAGATAATGCCAGTCCTCCCGTACCTGGTTCTCCCACCGGGAGATCGCCCTCTGATGGATCAGGTGACTCAGCTGGTAATGATGAAAAGAAAAGTAATGCTGGAGTGGTTGTTGGCGCTATAATTGGTGTTATTGTTGGCCTTCTTGTTGTTGGGACTGTGATTTTCTTTTTGTGCAAGAGGAAGAAGCGACGTGGTAATAGAGTGCAGAGTCCAAATACTGTGGTGGTACATCCTAGCCATTCTGGAGACCAAAATTCGGTGAAGATTACGATTACAGAGGCTAGATCCGATGGAAGTGCGCCCGAAACCAGCAGAGTTCCTATTGCTGGACCTAGTGACGTGCATGTAGTAGAGGCAGGAAACCTTGTTATCTCGATTCAAGTTTTAAGGAGTGTAACTAATAATTTTAGCCCTGAAAATATATTGGGGAAAGGGGGTTTTGGAACTGTTTACAAGGGAGAATTGCACGATGGTACGATGATTGCTGTGAAGAGAATGGAGTCTGGAGTCATAGGTGAGAAGGGTTTGAATGAATTCAAGGCTGAGATTGCAGTTCTTACAAAGGTTCGCCATAGAAACTTGGTTGCGCTTCTTGGGTATTGCTTGGATGGAAATGAGCGGCTTCTCGTTTATGAATACATGCCCCAGGGGACGTTTAGTAGGTTTCTGTTTAACTGGAAAGAAGAAGGTATTAGACCCCTTGAATGGAAAAGAAGGTTGATTGTTGTCTTGGATGTGGCCAGAGGTGTTGAGTATTTGCATAGTTTAGCACATCAGAGCTTTATCCATCGTGATCTCAAACCATCAAACATTCTTCTCGGAGATGATTTACGGGCTAAAGTAGCTGACTTTGGGTTGGTTCGTCTTGCTCCTGAAGGGAAGGCATCGATTGAAACAAGACTAGCGGGAACATTTGGCTATCTTGCCCCTGAATATGCAGTAACTGGACGAGTTACAACCAAGGTCGATGTTTATAGCTTTGGGGTGATCCTCATGGAGATGATATCTGGTAGAAAAGCAATCGACGAGAGCCAGCCAGAAGAAAGTTTGCACCTTGTATCATGGTTCCGCAGAATGCACATTAACAAGGACACTTTCTCAAAGGCCATAGACCCTTCAATCGACATAGACGAGGAGACCCTTGTCAGCATCAACACAGTTGCAGACTTGGCTGGTCATTGCTGTGCAAGAGAGCCATACCAACGGCCCGACATGGGTCATGCAGTCAACGTGCTTTCGTCTCTAGTCGATGTCTGGAAGCCTACAGAACCAGACTCCGAAGAGAATTTGGGGATTGATCTTGAGCTTTCATTACCACAGGCCCTTAGGAAATGGCAGGCATTTGAAGGAAATAGCAATGTGGACATGTCCTCCTCTTCATCATCATTCCTTGCCAGTGGTGACAATACACAAACCAGCATACCGAACCGGCCATCTGGTTTCGCAAATTCATTTACCTCTGTTGACGCACGGTGA 2853 44.97 MRKPHFGFGVFLLLFPLFLHFLGFSVFAQPAAGGAGDGSVMNLLKNSVGAPSSLGWTGSDYCQWNHVKCDSQSRVVKIQIGNQNLKGSLPKELFSLSALVQLEVQSNQLGGPFPNLADSLQILLAHDNLFTSMPADFFAKKSALQTIDIDNNPFSAWQIPDNIRDASALQQLSANRVNITGIIPGIFDGATFPTLTNLHLAGNFLEGELPASLAGSSIQSLWLNGQQSSSKLNGSIAILQNMTNLQEVWLHMNQFSGPLPDFSNLQGLAKLSLRDNQLTGIVPSSLVNLKSLMVVNLTNNLLQGPTPAFDPNVQLDMKPQTNKFCLDSPGEPCDPRVNALLSVAESMGFPTAFAQGWAGNDPCQGFKGISCIGNPTNISVINLKNMGLAGSISPSFSLLTSVQKLFLSNNFLSGTIPNELATMPSLTELDVSNNRLHGKVPVFRKNVIVNTQGNPDIGKDNASPPVPGSPTGRSPSDGSGDSAGNDEKKSNAGVVVGAIIGVIVGLLVVGTVIFFLCKRKKRRGNRVQSPNTVVVHPSHSGDQNSVKITITEARSDGSAPETSRVPIAGPSDVHVVEAGNLVISIQVLRSVTNNFSPENILGKGGFGTVYKGELHDGTMIAVKRMESGVIGEKGLNEFKAEIAVLTKVRHRNLVALLGYCLDGNERLLVYEYMPQGTFSRFLFNWKEEGIRPLEWKRRLIVVLDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASIETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKAIDESQPEESLHLVSWFRRMHINKDTFSKAIDPSIDIDEETLVSINTVADLAGHCCAREPYQRPDMGHAVNVLSSLVDVWKPTEPDSEENLGIDLELSLPQALRKWQAFEGNSNVDMSSSSSSFLASGDNTQTSIPNRPSGFANSFTSVDAR* 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23053261 23057274 + CsaV3_5G027860.1 Csa05g01967 530354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01967 950 SMART serkin_6 595 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01967 950 PANTHER OSJNBA0070M12.3 PROTEIN 22 950 - -
Csa05g01967 950 MobiDBLite consensus disorder prediction 917 950 - -
Csa05g01967 950 Gene3D Transferase(Phosphotransferase) domain 1 673 889 - -
Csa05g01967 950 SUPERFAMILY Protein kinase-like (PK-like) 576 883 IPR011009 -
Csa05g01967 950 SUPERFAMILY L domain-like 39 313 - -
Csa05g01967 950 Gene3D Phosphorylase Kinase; domain 1 561 672 - -
Csa05g01967 950 Gene3D Ribonuclease Inhibitor 36 332 IPR032675 -
Csa05g01967 950 MobiDBLite consensus disorder prediction 452 487 - -
Csa05g01967 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 720 732 IPR008271 GO:0004672|GO:0006468
Csa05g01967 950 Pfam Leucine rich repeat N-terminal domain 337 371 IPR013210 -
Csa05g01967 950 Pfam Leucine rich repeat N-terminal domain 37 70 IPR013210 -
Csa05g01967 950 Gene3D Ribonuclease Inhibitor 335 461 IPR032675 -
Csa05g01967 950 Pfam Protein kinase domain 598 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01967 950 ProSiteProfiles Protein kinase domain profile. 595 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01967 950 ProSitePatterns Protein kinases ATP-binding region signature. 601 623 IPR017441 GO:0005524
Csa05g01967 950 PANTHER RECEPTOR PROTEIN KINASE TMK1 22 950 - -
Csa05g01967 950 SUPERFAMILY L domain-like 360 442 - -
Csa05g01967 950 CDD STKc_IRAK 601 874 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01967 - - K00924 csv:101210025 1825.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01613 Csa-Chr5:19097948 Csa05g01967 Csa-Chr5:23053261 4.94E-21 dispersed
Csa05g01967 Csa-Chr5:23053261 Csa06g00932 Csa-Chr6:7480747 0 dispersed
Csa05g01967 Csa-Chr5:23053261 Csa03g03488 Csa-Chr3:31226510 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001831 2 2 1 2 3 1 4 1 1 2 2 1 4 2 1 4 1 1 4 1 2 2 2 2 2 2 2 3 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78258 PF00069 Pkinase 2.20E-46 CL0016 Csa PK