Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01971 ATGTTTTTCGACGCCGCCCCTCTCTCCATCCTCCTCCTCTTACCTCTGGCCTCCGCCCAACCCACAACAAACCCCCGCAAATTCTCCTCCTTCTCAATTTCCCAATCTCCATGGCGGCCCACCCAGAACCTCACTCTCCTTTCCCCCAACTCCCTTTTCGCCGCCGGCTTCCACCCACTACCCAACAACTCCAATCTCTTCATCTTCTCCGTTTGGTACTTCAACATCTCAACCGACAACGTCGTCTGGTCCGCCAACCGTCTTCATCCGGTCAACCGTTCAGCAGCTCTGGTCATCACAGCCACCGGCCAGCTCCGTCTCAACGACGCCTCCGGTCGCAACCTCTGGCCTTCCAACAATGTCTCAGCCCATTCAAACTCGACCCAATTAATCCTTCGCGACGATGGTGACTTGATTTACGGCACATGGGAAAGCTTCCAATTCCCCACCAATACTTTCTTGCCTAATCATACATTTAATGGAACCTCAATCGTCTCCAACAACGGCAAATATTCGTTTGTAAACTCTGCTAATTTGACGTTTGGTACAGAGACTTATTGGTCCTCTGGAAATCCATTCCAGAATTTTCAAATTGATGGTCAAATTATCATAAACAATCAAATCCCAGTTATCCCTTCTGATTTTAACTCGACCCGGTTCCGGAAATTGGTTCTTGATGATGATGGGAACCTCAGGATTTTTAGTTTCAACCCCAATTGGCCTCGGTGGGATGTAGTTTGGCAAGCACATGTAGAGTTGTGTCAAATTTTAGATACTTGTGGCCCAAATTCTGTCTGTATGAGTAGTGGCAGTTACAATTCCACTTATTGTGTCTGCGCACCCGGATTCAGCCCCAATCCTCGAGGAGGAGCGCGGCAGGGATGCCACCGGAAACTCAACGTATCAAACAAACCCAAGTTTCTTCAACTGGATTTTGTGAATTTCAGAGGCGGGGTTAAACAAATCTCTTTGCAAACTCCAAATATTTCAGTCTGTCAAGCGGATTGCTTGAAGAATTCGAGCTGCGTGGGCTATACATTCAGCTTCGACGGCAACGGCAACGCCCACGCCCAGTGTGTGCTTCAGCTAGACATTTTGTCGAACGGGTTGTGGTCTCCTGGGATGAAGGCAGCTGCCTTTGTGAAGGTCGACAATTCGGAAACAGATCGCTCAAATTTCACCGGAATGATGTACAAACTCCAAACTACATGTCCAGTTCGCATAACCCTCCGGCCCCCACCGGTAAATAAAGACAACACCACCAGAAACATATTGATAATCAGTACCATATTCGTTGCCGAACTAATTACCGGTGCAGTTTTCTTCTGGGCATTCTTGAAGAGATTTGTAAAATACAGAGACATGGCTCGCACTCTTGGTCTCGAATCACTTCCCGCCGGCGGCCCAAAGCGGTTCAATTATGCCGAGCTAAAGACGGCCACAAACGACTTCTCGACCTGCATCGGAAGAGGGGGATTCGGCGAAGTCTTCAAGGGGGAGCTGCCAGACAAACGTGTGGTAGCCGTCAAGTGCTTGAAAAACGTCGCGGGAGGTGACCGTGACTTTTGGGCGGAGGTCACCATCATCGCGAGGATGCACCATCTTAACTTGCTTCGATTATGGGGATTCTGCGCAGAAAAGGGTCAGAGAATTTTAGTATACGAACATATCCCGAATGGATCGCTGGACAAATTCCTGTTTGTGAAGCATTCACCTTCCGATTCGGAGAAGGAGGAAAGAGAGACGGAAGAAGAAAGGTCACCGCTGGATTGGAGCATACGGTACCGAATCGCCATCGGAGTAGCGAGAGCAATCGCGTACTTGCACGAGGAATGCTTGGAATGGGTGTTGCATCGAGACATAAAACCAGAGAACATCCTTCTAGACAACGATTTCTGCCCGAAGTTATCAGATTTCGGGTTGTCGAAGTTGAGGAAAAACGAGGAGACAACAGTGAGTATGTCTCGGATCAGAGGGACGCCTGGATATGTAGCACCGGAGCTGGTGAAATTGGGTTCAAATTCAATAACGACGAAGGCAGATGTGTACAGTTTCGGGATGGTGCTGCTGGAGATAATCAGCGGGACAAGGAATTTTGAGATAAAGAGATGGACAGTGGAGAGTGCAGATTGGTACTTTCCAGGATGGGCATTCGAGAAGGCGTTCGTGGAGGAGAAGATGAAGGAGATATTAGACGGTCGGATAAGGGAAGAATACGAGAGGGGGGGTAATGTATGTATTGTTAATCGAATGGTGGAAACGGCGATGTGGTGTCTTCAAAACCAACCGGAGAAGAGACCGTCGATGGGGAAAGTGGTGAAGATGTTGGAAGGGAAGCTTGAAATTCCTCCTCCAGAAAAGCCTTCTATTTACTTCTTGTCTCAATGA 2388 48.53 MFFDAAPLSILLLLPLASAQPTTNPRKFSSFSISQSPWRPTQNLTLLSPNSLFAAGFHPLPNNSNLFIFSVWYFNISTDNVVWSANRLHPVNRSAALVITATGQLRLNDASGRNLWPSNNVSAHSNSTQLILRDDGDLIYGTWESFQFPTNTFLPNHTFNGTSIVSNNGKYSFVNSANLTFGTETYWSSGNPFQNFQIDGQIIINNQIPVIPSDFNSTRFRKLVLDDDGNLRIFSFNPNWPRWDVVWQAHVELCQILDTCGPNSVCMSSGSYNSTYCVCAPGFSPNPRGGARQGCHRKLNVSNKPKFLQLDFVNFRGGVKQISLQTPNISVCQADCLKNSSCVGYTFSFDGNGNAHAQCVLQLDILSNGLWSPGMKAAAFVKVDNSETDRSNFTGMMYKLQTTCPVRITLRPPPVNKDNTTRNILIISTIFVAELITGAVFFWAFLKRFVKYRDMARTLGLESLPAGGPKRFNYAELKTATNDFSTCIGRGGFGEVFKGELPDKRVVAVKCLKNVAGGDRDFWAEVTIIARMHHLNLLRLWGFCAEKGQRILVYEHIPNGSLDKFLFVKHSPSDSEKEERETEEERSPLDWSIRYRIAIGVARAIAYLHEECLEWVLHRDIKPENILLDNDFCPKLSDFGLSKLRKNEETTVSMSRIRGTPGYVAPELVKLGSNSITTKADVYSFGMVLLEIISGTRNFEIKRWTVESADWYFPGWAFEKAFVEEKMKEILDGRIREEYERGGNVCIVNRMVETAMWCLQNQPEKRPSMGKVVKMLEGKLEIPPPEKPSIYFLSQ* 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23094044 23097000 + CsaV3_5G027900.1 Csa05g01971 530358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01971 795 PANTHER OS10G0101000 PROTEIN 12 794 - -
Csa05g01971 795 Gene3D - 36 153 IPR036426 -
Csa05g01971 795 SUPERFAMILY Protein kinase-like (PK-like) 465 777 IPR011009 -
Csa05g01971 795 ProSiteProfiles Bulb-type lectin domain profile. 37 153 IPR001480 -
Csa05g01971 795 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 234 IPR036426 -
Csa05g01971 795 ProSiteProfiles Protein kinase domain profile. 482 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01971 795 PIRSF SRK 1 795 IPR024171 GO:0004674
Csa05g01971 795 Pfam S-locus glycoprotein domain 216 286 IPR000858 GO:0048544
Csa05g01971 795 SMART serkin_6 482 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01971 795 CDD STKc_IRAK 488 778 - -
Csa05g01971 795 ProSiteProfiles EGF-like domain profile. 250 290 IPR000742 -
Csa05g01971 795 ProSiteProfiles PAN/Apple domain profile. 295 385 IPR003609 -
Csa05g01971 795 Pfam Protein kinase domain 487 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01971 795 Gene3D Transferase(Phosphotransferase) domain 1 557 782 - -
Csa05g01971 795 SMART blect_4 41 149 IPR001480 -
Csa05g01971 795 Pfam D-mannose binding lectin 81 160 IPR001480 -
Csa05g01971 795 ProSitePatterns Protein kinases ATP-binding region signature. 488 510 IPR017441 GO:0005524
Csa05g01971 795 CDD B_lectin 45 149 IPR001480 -
Csa05g01971 795 Gene3D Phosphorylase Kinase; domain 1 453 556 - -
Csa05g01971 795 PANTHER OS07G0415500 PROTEIN 12 794 - -
Csa05g01971 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01971 - - - csv:101221701 1602.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01971 Csa-Chr5:23094044 Csa06g00474 Csa-Chr6:4016862 7.65E-113 dispersed
Csa05g02636 Csa-Chr5:27446431 Csa05g01971 Csa-Chr5:23094044 3.14E-76 dispersed
Csa05g01971 Csa-Chr5:23094044 Csa05g01973 Csa-Chr5:23103617 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0729 . . . Csa05g01971 . . . . . . . . . . . . Cmo15g00931 . Cma15g00892 . Car15g00838 Cpe13g00425 . Bhi12g00960 . . . . . Lcy10g1599 Cla01g00650 . . . . . . Lsi09g00703 . Chy09g00808 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003119 0 2 1 0 0 2 2 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78259 PF00069 Pkinase 4.70E-45 CL0016 Csa PK