Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01972 ATGGCAGGATGCAAGATTTATTTGAAGAAAAGGAAAACAGATTGGCTTAATTCCCTTTTGCAAAGCAAATTTTTTGGTTCTTGTGTTCATCATCAAAACAATAGAAAAAATGAAAAGAATGTGTTTTGTATAGATTGTGGTATTGCTATCTGCAGGCATTGCCTGATATCTCATTGTGTTCATCGCCGGCTACAGATCTGTAAGTACGTTTATCAGTACGTCGTTCGTGTTCCCGACTTACAGGACCACCTTGATTGTTGCAATATTCAGACTTATAAGATAAATGGGGAGAAGGCTGTTCATTTGAGTCCTCGTCCACAATCGAAAGATTCGAAACCGTCAACAAAATTGAAGTTTGGAGGTACTTGTGAAGCTTGTGGGAGATACATACAAGACTTGCCTAATCGCTTCTGCTCGATCGCCTGCAAAGTCTCTATGGTTCCAATGGAACTCAACAATCAATGCTGTAGATTCATGGATTCAGAGCCAAATCTTAAAGATATTCCATGGAAGGAAAACCATAATCTAGAAATCAATACAAGTGAAATGGAATCATCATCGATCTCAGTAGCTGAATCAACTGAAGAGATTAAAGCATGGCGAGTGAAGATGGTGTTGAATCCAAAGAAGCTTTTGCATAAAAGGAAAGGCATTCCACATCGATCGCCTCTGAAGTAA 678 38.94 MAGCKIYLKKRKTDWLNSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCVHRRLQICKYVYQYVVRVPDLQDHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFGGTCEACGRYIQDLPNRFCSIACKVSMVPMELNNQCCRFMDSEPNLKDIPWKENHNLEINTSEMESSSISVAESTEEIKAWRVKMVLNPKKLLHKRKGIPHRSPLK* 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23097481 23099780 - CsaV3_5G027910.1 Csa05g01972 530359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01972 225 Coils Coil 224 225 - -
Csa05g01972 225 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 224 - -
Csa05g01972 225 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 224 - -
Csa05g01972 225 ProSiteProfiles Zinc finger B-box type profile. 28 66 IPR000315 GO:0008270
Csa05g01972 225 Pfam PLATZ transcription factor 68 144 IPR006734 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01972 - - - csv:101210438 481.485
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa05g01972 Csa05g01125 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01125 Csa-Chr5:11490783 Csa05g01972 Csa-Chr5:23097481 6.43E-20 dispersed
Csa05g01972 Csa-Chr5:23097481 Csa06g00924 Csa-Chr6:7432528 1.28E-36 dispersed
Csa05g01972 Csa-Chr5:23097481 Csa03g04602 Csa-Chr3:40021423 3.63E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g526 . . . . Bpe13g01001 . . . . . . Cma04g00083 . Car04g00084 . Cpe09g00608 Cpe01g01855 . . . . . . . . . . . . . . . . . Cone9ag0379 . Csa05g01972 . . . . . . . . . Bma06g01137 . Cmo04g02230 . Cma04g02137 . Car04g02074 . . . Bhi12g00959 . . . Hepe02g2605 . Lcy10g1600 Cla01g00649 Cam01g0678 Cec01g0671 Cco01g0697 Clacu01g0666 Cmu01g0639 Cre09g1866 Lsi09g00702 Csa05g01125 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002993 1 2 0 1 1 2 3 2 2 0 2 2 2 1 2 2 2 1 3 2 2 1 2 2 2 2 2 3 3 1 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31777 PF04640 PLATZ 5.20E-24 No_clan Csa TF