Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01978 ATGGGAAAGACGATCGAAATTTACGGATTTCGGCCCCAGGTGACCGCCGACGAGGTGAAAGAATTTCTCGAGAATCACACTGGAGATGGAACTGTATCAACGGTGCGGATTTCGAAACCCAAAGACGAAAAAGCCCGGTTCACATCTGTGACTGTCCTGTTCAAGAGCAAACTAGCAGCTGAGTACATAGTGGCGAAGTCGACAACGGAGGAGAGGAAACTGTGGTTCGAAAGTTCATATCTGAAAGCCAGAGAATTGGAGAAGGCGGTAGTGGCGAAGGAAACCAAGGGTGTTCTCGAAATGGAGAGAATGGAAGACGTGAAGGGGCACTTGGGAAGCATGATTTCGAACGGGAAAATGAGAGTGATTTGGGAAGGAGAGAAATGGAGTGTGGAATTTGGAAATGGATTTAGGAAATTATGGTTTTATTTGAGTTATGAAGTTGATGAGTACAAAATGGAGCTTTGTTTTGAGAATATTTTGAGTGTTGAGTTTCGTTGCCCTCTCAACGAACCTTCCAAGTTTTTTCTCATTCAGTTGCAGGGTGCTCCACGAATTTTCAGGAAAACTCCATCATCTTCCTCCTCACCATTATATTCCAACAAATCCACTAGTTTTCGTTGGATTAGGGATGTGGATTTCACTCCATCTTCCTGCATTGGACAATCCTTTACTATATGCCTCCAACTTTCTCCTTCACATCACCTTCCTCCTTTCTTCCAAACATTGGTTGGCTACAAAGTGACCTATGCTCCATTCATTCTCCATAAAGGTTCTTCTCTCGTTTCAAATTCAAATTTGGTTCCTATCATTACTCCACCCCAAGCTTTTGATATCTCTTATAAAATTTTGTTCAAAATCAATGCCCTCCTTCAACATGGTTATCTTTCTGGACCGACGCTAGATGATGAATTTTTTCGACTTGTTGATTCAAGTAGATTTCATTCTGACTACATTGAACACGCCTTAGAAAAACTGTTTAATTTGAAGGAATGTTGTTATAAACCACAAAAGTGGCTCAAAGACCAATATCTTTCATACTACACCTCTAATCAGCTTCCATGGAAATCTAATATTTCTCTAGATGATGGCCTAGTGTATGTGCATAGAGTTCAAATTACACCGTTGAAAGTGTACTTCTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTCGTTTTATTGGTGATATAGATAATTTTCTTCGTGTATCTTTTGTTGATGAGGAATTGGATAAACTTCATTCCATTGATCTAGCTCCACGTTCATCATCTCCTGAAAATAGTCAAAGAACTAGAGTATATGATAGAGTAATATCTATATTAAAAAATGGTATAGTGATTGGTAATAAAAAGTTTGAGTTTCTGGCTTTTTCAGCTAGTCAATTAAGGGAAAATTCTTTTTGGATGTTTGCTTCGAGGGAGGGGTTAAGTGCAGCAGATATCAGAGAGTGGATGGGTGACTTTCATCATATAAGAAATGTGGCAAAATATGCTGCTCGACTTGGTCAATCTTTTGGCTCATCTAGAAAAACTTTGTGTGTTGAAGAACATGAAATTGAAGTTATTCCTGACGTAGAAGTTGAAAGGAAGAACATTATGTATTGTTTCTCTGATGGGATTGGAAAAATATCTAAAACACTAGCTAAGAAAGTTGCTGAAAAATGTGGTTTGACCAGTCATACACCATCTGCCTTTCAGATTCGCTATGCCGGATACAAAGGTGTTGTAGCTATTGACCCTACGTCGGAAAAGAAATTGTCATTACGAAAGAGTATGTTGAAGTATATGTCACTTGATACACAACTTGATGTTTTGTTGTGGAGCAAGTATCAACCATGTTTTCTTAACCGTCAGGTGATAAACCTTCTATCAACTCTTGGAATTAGGGACGATGTTTTTGTGAAAAAACAAAAGGAGGCTATAGATCAACTAGATTCTATTTTGGAAGATCCATCAAGGGCATTAGAAGTGTTGGAGTTGATGTCCCCTGGAGAAATGACTAGTATTTTAAAGGAACTACTTTCGTTTTACATGCCAAATCAAGAACCTTTTCTAAATATGATGCTACGGACATTTCGTGCAGATAAATTGTTAGATTTGAGGACAAAGTCAAGGATATTTGTTCCAAAGGGAAGGACAATGATGGGTTGCCTGGATGAAACTCAAACACTAGAATATGGGCAGGTGTTTGTTCATTGCTCTATCCCTGGAAGATCAAGTGAGGGTAATTTTGTAGTTAAGGGTAAAGTAGTTGTTGCTAAAAATCCATGTTTACATCCGGGGGACGTGCGTTTGCTCGATGCTATTGATGTGAAAGCTCTACATCACATGGTGGACTGTGTTGTTTTTCCACAAAAAGGAAAAAGACCTCACCCAAACGAGTGTTCTGGAAGTGATTTGGATGGTGACTTGTACTTTGTTTGTTGGGATACTGAGCTAACTTGTATCAAACAAGTTAAACCTATGAGCTACAAACCTGCACCAACAATACAATTGGATCATGATGTCACAATTGAGGAAGTTCAAGAATATTTTGCCAATTACATGGTGAACGATGGTCTTGGAGCCATTGCAAATGCTCACACTGTCTTTGCAGATAAGAACTCTAAGAAGGCAATGAGTGCTGAATGTATTAAACTTGCAAAATTGTTCTCCATTGCTGTTGACTTCCCGAAGACTGGTGTGCCAGCAAACTTGCCACGCAACCTTCGTGTCCACGAGTATCCTGATTTCATGGACAAGCCTAATAAAGCAACTTATGTATCAAATGGTGTTCTTGGGAAGCTTTTTAGAGGAGTGAAAGATGTTTCATCTGATGTCAGCGCCTTTGAAATTTTCACTAGAGAAGTTGCAACCAAGTGCTACGATCCAGACATGGAAGTAGATGGGTTTGAAAAGTATTTGAGAGAAGCTTTTGATTACAAAACTAAGTACGATTTCAAGTTGGGGAACCTTATGGATTATTATGGTATTAAAACAGAACCTGAATTAGTTAGTGGAAATATCTTGAAAATGGCTAAATCTTTTGATAAAAGGAAGGATTTGGAACAAATTGCATTTGCTATGAAGTCTCTAAGAAAGGAGGTTAGGTTTTGGTTCAATGAGAATGAAAGTAAGTCTACATACGACGATATCCAAGACGAATATGCAAGAGCATCTGCATGGTACTGTGTCACGTATCACCCAGATTATTGGGGTTGTTACAATGAAGGTACAAAACGGGATCACTTTTTGAGTTTTCCATGGTGTGTTGCTGACAAACTTATTCAAATCAAAAGAGAGAAGATGTCAATGAGAAATTCTTCTCCAAAGTCATCACTATTACACACAATTTTGATGGGGTGA 3351 38.79 MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDHDVTIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLEQIAFAMKSLRKEVRFWFNENESKSTYDDIQDEYARASAWYCVTYHPDYWGCYNEGTKRDHFLSFPWCVADKLIQIKREKMSMRNSSPKSSLLHTILMG* 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23157203 23161886 + CsaV3_5G027970.1 Csa05g01978 530365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01978 1116 Pfam RNA dependent RNA polymerase 373 935 IPR007855 GO:0003968
Csa05g01978 1116 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 1104 - -
Csa05g01978 1116 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 1104 IPR007855 GO:0003968
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01978 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - csv:101205704 2258.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01978 Csa-Chr5:23157203 Csa05g02004 Csa-Chr5:23323285 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g508 . . . . . . Bma14g01918 . . . . Cma04g00090 . . . . Cpe01g01851 . . . . . . . . . . . . . . . . Cone6ag0354 . . Csa05g01978 . . . . . . . . . . . Cmo04g02226 . Cma04g02132 Cma15g00901 Car04g02070 . . . . . . . . . . . . . . . . . . . Chy09g00813 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003921 0 1 0 0 0 2 2 1 2 1 2 2 2 2 3 2 2 0 2 2 2 2 1 2 2 2 1 4 1 0 45