Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01981 ATGGGAGACGTGAAGGACAAGGTCAAGGGTTTCATGAAAAGGTTTAATAACACGTTGTCTTCATCTTCTTCTACGAATTTTAAGGGACAGGGAAGAGTTTTAGGTTCATCTTCTTCTGGGTCGACTAGTTCTATGCCTACCCGCCCATCGGAGAATCCCATTTCAAAGCCGAAGCTTGTTAGTCCACCTTCAAATTCCTCTGCCAATTCTAAGCCCCCGGTTGCCAATTCGATTGCCACTGGTCAAAACAGGTCGGACCCGTCGAATACATCGAATCCAGATCGTATTCCGGCCGATGGATTTGACCCATTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAACGTGTTTGAATGTCCGATTTGTGGTCGGAGTTACAGGTCTGAAGAAGAGGTTTCGGTGCACGTAGATAGCTGTGTCAACGATAGTACAGCCAAGGGAGCAGAAGATCCGCCTACGAGTGATGCAGAACCTAGGAGTGAATTGGAAGCTTGTATTGGTACTTTCTTATCAGGGAAGCCAACACAAGGTTCATTGGATATTGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGAGAATTCAAAATTTAGGAAGATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTTGGGGGAGTGGAATTGTTGGAGTTTGTGGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGGCAACCATGGAGGTTCCAACGGAGGAACAAATTAACCTATTATGTAAGGTAATCGATTTGATTGACCAGCCAAAGCTTGAAGAACAGCAAAAGAAAGCCAGCACAGCACCTGACCTGATTGAACCAAAGAAGGTGGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAACATTGCAGCGAAGATTGAACTACCAGACTCCTTTTACAGACTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAGCAAAAGATTGCTGAATCTCAGCTTTTGGTTCCCAAATCATACAAGGAAAAACAAGCAAAAGCTGCTAGGAGGAAGTACACAAGAACGGTTATCAGAATTCAATTTCCGGACGGTGTGGTTCTTCAAGGTGTTTTTTCTCCTTGGGAACCAACAAGTGCTCTATATGAGTTTGTGAGCACAGCACTGAAAGAACCCTGTTTGGAATTTGAGTTGATACATCCTGTTGGTGTTAAACGACGTACAATCGCTCATTTTCCCGCAGAAGGAGAGAAATCTAAGACACTAGATGATGAGGAGTTAGTCCCCTCAGCTCTGGTAAAGTTTAGACCAATTGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAACGAACTGCTTGAGATTATCGAACCACTTGTAAGCGGTTCAGCCGTGGCTCCTCCTACGCAACGAAGACTAGATGAAATGCTGTCGATGTTGTTCATTATATTCAAGGAATGGAATTTTGCGAGACTCTTTGCAATTACTCACCATAAAGTGATGACTCATTGGAGCTATCAAGCTAGTTTGAATTTGAATTTTTATCGTTTTGATCCTTTGGAGCTGGACAAGGTCGTGATAATTGTCAGCGTGACAAATTTGGGAATTAGCTTGGAACAATTTGATGTTTCCGAGATAACGATATGTCAATGCTAA 1659 42.74 MGDVKDKVKGFMKRFNNTLSSSSSTNFKGQGRVLGSSSSGSTSSMPTRPSENPISKPKLVSPPSNSSANSKPPVANSIATGQNRSDPSNTSNPDRIPADGFDPFDSFITSGKRSGNGYSLNVFECPICGRSYRSEEEVSVHVDSCVNDSTAKGAEDPPTSDAEPRSELEACIGTFLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEEDGEMWATMEVPTEEQINLLCKVIDLIDQPKLEEQQKKASTAPDLIEPKKVDRQIRVFFAVPENIAAKIELPDSFYRLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPWEPTSALYEFVSTALKEPCLEFELIHPVGVKRRTIAHFPAEGEKSKTLDDEELVPSALVKFRPIETDSVVFTGLRNELLEIIEPLVSGSAVAPPTQRRLDEMLSMLFIIFKEWNFARLFAITHHKVMTHWSYQASLNLNFYRFDPLELDKVVIIVSVTNLGISLEQFDVSEITICQC* 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23172524 23181163 - CsaV3_5G028000.1 Csa05g01981 530368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01981 552 CDD PUB 170 266 - -
Csa05g01981 552 ProSiteProfiles UBX domain profile. 352 436 IPR001012 GO:0005515
Csa05g01981 552 SMART c2hc_5 122 146 IPR006642 GO:0003677|GO:0006281
Csa05g01981 552 SUPERFAMILY PUG domain-like 180 255 IPR036339 -
Csa05g01981 552 Gene3D - 346 438 - -
Csa05g01981 552 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 462 - -
Csa05g01981 552 SUPERFAMILY Ubiquitin-like 323 436 IPR029071 -
Csa05g01981 552 SMART PGNneu 183 250 - -
Csa05g01981 552 MobiDBLite consensus disorder prediction 15 103 - -
Csa05g01981 552 Pfam PUB domain 182 255 IPR018997 -
Csa05g01981 552 CDD UBX_UBXN6 357 437 - -
Csa05g01981 552 Gene3D - 177 267 - -
Csa05g01981 552 MobiDBLite consensus disorder prediction 15 51 - -
Csa05g01981 552 Pfam UBX domain 353 432 IPR001012 GO:0005515
Csa05g01981 552 SMART ubx_3 349 438 IPR001012 GO:0005515
Csa05g01981 552 MobiDBLite consensus disorder prediction 57 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00947 Csa-Chr2:8924243 Csa05g01981 Csa-Chr5:23172524 1.91E-06 dispersed
Csa05g01981 Csa-Chr5:23172524 Csa06g00120 Csa-Chr6:804547 2.24E-08 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31778 PF00789 UBX 1.70E-05 CL0072 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01981 K14011 - csv:101209321 902.508