Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01992 ATGGAAAAAATCTTCCGGATTATCAATATCAATATTTCAACTCATAAATTACTCAATTTCTCTCTCAGAACTCCTAAACTTCTCACTCCGCTTGTACTCTTTCATGGTTCTAACAAAAACCTGATCTCAGATTCGGAGCTGGAACTCGATTCCGACAATCTCGGTTATCGGCCACCCGGGTCTCGAAGACGCTGGATTTCTGAAGAACAGGTTGATCTTAGAGAGGTTTCAAAAGCAAGGGAGTTTAAAGTTCAGTTAGACCCATGGCCGGAATGGGTGGACTTCATGGAATGTTTGTCAAAGAAAGGGTACTTTGAAGGAGACAGAATCCCGCTTCTAAATGCCGAATTGGGTGCAAAAGATTTCAATCATATTCGGACTGCGTCTCTTGATTTCGCAAGGGATCGGTCTAACCTGATACGGTCCTTGTCCAGGAAAGACTTAGAGGTGATTGCAGGATGTGGATGCCCAAGCACAGATAGGAAAGTTGTGAACTCAGGGAAGCGTCTGAGAGCACATTTGGGCATTGATGAGGGAAATGTCTGCAGTTCTTGTGACCTGCAAAGAGAATGTGAGAGGGCATATGCAAAGGCATGTGGAGATGAAGGAGGTCGGACCTTGGATGTCATGTGCGTTTTATTATTTTATGGGCTCGATCACATCTCTGCTATAGTGGAGAACAGACCATGTTTGAACAAAACAGCCAATGACTCTGTTAGAAAGCTGTTGAAAGATATTGTTGAACATAGTACAGGAGAACGTGAATCTGATCTTCTAAAGTCTAAGGAGGCTACTTCAGCAGAAAGTCATGACACAAGTGCTTCGGCGACACGAGGCGACTGGCATTGTCCAAAATGCAACTTTTTCAACTTTTCTAGAAACGTCAAGTGCTTACGCTGTGGTCATATATTCCTTGAGAGACTTCGGAAACTTAATGAGGATCAAGTCAATCTTCCGTTGAAGAAGGGCGACTGGATTTGCGACACGTGTAATTTCTTGAACTTTGCTAAAAATTCTACATGTTTGCAATGCAAAGAGAAGCCTTTGAATCGACGGCTGAATCAAGGGGAATGGGAATGCGAATCGTGCAACTATATCAATTTTCGAAAGAACACGCAATGCTTGAAGTGTGATCACCAACGGCGGAAAGCACTAAATACGCGAAGCGTTTCTGCTGGACCTGCATTTGAGAATGGAAACTACAGTTTCAGTAAGCCTAAACTCTCTTTTGGTGAAGTTGGAAATAATGCAAGTAGAAAAAATGATGGTTGGATGTGGAGATTTGGTGAAAATGAGAGTGAAGATGATTCCGGAATTCTAGATTTCCCTATTGCTCGCTCTTCTGGTAGTACAGAAAGACAAGAAAGAAGGAAAGTGGAGATGTTAGAGAAGAGAAAATTAATGGAAAATGCAGTAGCGAAAGAAGAAGATCTAATATTGAGATCTAACAATATTGAAAGAAGATTCGAGTTTGTTGAATCTTCTGATGATGAAAACATAATCGAATGGTTTGGACACAAGCCAGAATCAAGCAAATAG 1539 41.65 MEKIFRIININISTHKLLNFSLRTPKLLTPLVLFHGSNKNLISDSELELDSDNLGYRPPGSRRRWISEEQVDLREVSKAREFKVQLDPWPEWVDFMECLSKKGYFEGDRIPLLNAELGAKDFNHIRTASLDFARDRSNLIRSLSRKDLEVIAGCGCPSTDRKVVNSGKRLRAHLGIDEGNVCSSCDLQRECERAYAKACGDEGGRTLDVMCVLLFYGLDHISAIVENRPCLNKTANDSVRKLLKDIVEHSTGERESDLLKSKEATSAESHDTSASATRGDWHCPKCNFFNFSRNVKCLRCGHIFLERLRKLNEDQVNLPLKKGDWICDTCNFLNFAKNSTCLQCKEKPLNRRLNQGEWECESCNYINFRKNTQCLKCDHQRRKALNTRSVSAGPAFENGNYSFSKPKLSFGEVGNNASRKNDGWMWRFGENESEDDSGILDFPIARSSGSTERQERRKVEMLEKRKLMENAVAKEEDLILRSNNIERRFEFVESSDDENIIEWFGHKPESSK* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23225767 23228790 - CsaV3_5G028110.1 Csa05g01992 530379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01992 512 MobiDBLite consensus disorder prediction 254 278 - -
Csa05g01992 512 Gene3D - 270 302 - -
Csa05g01992 512 Gene3D - 312 349 - -
Csa05g01992 512 Gene3D - 350 383 - -
Csa05g01992 512 ProSiteProfiles Zinc finger RanBP2 type profile. 277 301 IPR001876 -
Csa05g01992 512 SMART zf_4 279 303 IPR001876 -
Csa05g01992 512 SMART zf_4 356 380 IPR001876 -
Csa05g01992 512 SMART zf_4 323 347 IPR001876 -
Csa05g01992 512 SUPERFAMILY Ran binding protein zinc finger-like 350 383 IPR036443 -
Csa05g01992 512 SUPERFAMILY Ran binding protein zinc finger-like 273 302 IPR036443 -
Csa05g01992 512 Pfam Zn-finger in Ran binding protein and others 321 345 IPR001876 -
Csa05g01992 512 Pfam Zn-finger in Ran binding protein and others 356 378 IPR001876 -
Csa05g01992 512 Pfam Zn-finger in Ran binding protein and others 279 301 IPR001876 -
Csa05g01992 512 SUPERFAMILY Ran binding protein zinc finger-like 315 346 IPR036443 -
Csa05g01992 512 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 18 266 - -
Csa05g01992 512 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 277 302 - -
Csa05g01992 512 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 297 510 - -
Csa05g01992 512 ProSitePatterns Zinc finger RanBP2-type signature. 281 300 IPR001876 -
Csa05g01992 512 ProSitePatterns Zinc finger RanBP2-type signature. 325 344 IPR001876 -
Csa05g01992 512 ProSitePatterns Zinc finger RanBP2-type signature. 358 377 IPR001876 -
Csa05g01992 512 ProSiteProfiles Zinc finger RanBP2 type profile. 321 344 IPR001876 -
Csa05g01992 512 ProSiteProfiles Zinc finger RanBP2 type profile. 354 383 IPR001876 -
Csa05g01992 512 PANTHER ZINC FINGER PROTEIN 277 302 - -
Csa05g01992 512 PANTHER ZINC FINGER PROTEIN 18 266 - -
Csa05g01992 512 PANTHER ZINC FINGER PROTEIN 297 510 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01992 - - - csv:101209154 1057.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00440 Csa-Chr1:2765336 Csa05g01992 Csa-Chr5:23225767 3.54E-65 dispersed
Csa02g00441 Csa-Chr2:3124498 Csa05g01992 Csa-Chr5:23225767 6.55E-39 dispersed
Csa03g03629 Csa-Chr3:32344329 Csa05g01992 Csa-Chr5:23225767 1.91E-21 dispersed
Csa04g02266 Csa-Chr4:23295080 Csa05g01992 Csa-Chr5:23225767 3.03E-12 dispersed
Csa05g01992 Csa-Chr5:23225767 Csa02g00172 Csa-Chr2:1196608 1.60E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g489 . . . Bda11g00183 Bpe13g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0370 . . Csa05g01992 . . . . . Bda11g00183 . . . . . . Cmo15g01024 . Cma15g00977 . Car15g00923 Cpe13g00350 Cpe04g01365 Bhi12g00936 . . . Hepe02g2626 . . Cla01g00635 . . Cco01g0681 Clacu01g0651 Cmu01g0625 Cre09g1879 Lsi09g00684 . Chy09g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011612 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29