Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g01999 | ATGTCCTCCCTATCCTTTTCTCCTTCCATGGACCCTCCCGCTCAACAGATCCCTCTCTTACCTTCCCGTCAGCCCCCCTCCAACTCTGACGCTTCCACTTCCCCAATCGGCCCTCTTGCCCTTCTCTTGGGTCGCGCCACTGGCCGCCGTGGAACTTCTATGCTCGTTCGTGAGACCGCGGCACGTGAACTTGAAGAGCGCCGCATCGATTGGGGCTATTCCAAGCCTGTAGTCGCCCTTGACATTACGTGGAATTTAGCTTTTGTTTTCGTTTCCCTGGGTGTGCTTATTCATTCTGTACATGAAAAACCCAATACGCCAATTCGGCTTTGGATTGTGGTTTATGCGGCTCAGTGCTTGGTGCACGTTGTGCTTGTGTGGTTTGAGTTTAAGAGGAGGAATGCGAGGAGAGCTAGGGATATGGAAACGCAGCAACAGCAGGAGCCTGATGGTTATGTAACTAATGAAAGCGATGAAGACGATGGTGGCCAAAGGAGTTTTTCCAGTGTTGCGAAAAGATGTGAGTCAGTGAACACTATGGTATCGTTAATTTGGTGGTTGTTTGGCTTTTACTGGGTCGTTGCTGGTGGTAACATCCTCATGCAGAATGCTCCATCTTTATACTGGCTGGCTGTTGTATTCCTGGCCTTTGATGTGTTCTTTGCAGTATTTTGTGTTGTTTTGGCATGTTTGATTGGCATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCCATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACCGATGCTGATTTAAGCATGCTTCCTAAGTATAGATATCGAGTGTCCAATGAGCCTTCTCCGGGGGATGGGTTGATGGTTCCAGTAGAGACTAGCAGTAGATACTTGACAACTGAGCGCGTTCTGTTATGCGAGGATGCGGAGTGCTGTATATGTCTTAGTCCATACGAGGATGGAGTCGAGCTTCATGCTCTTCCCTGCAATCACCATTTTCATTATGCGTGCATCACAAAATGGCTGAAGATGAATGCAACATGTCCTCTGTGCAAATATAATATTCTTAAGAATTGTGAACATGTGTAA | 1071 | 47.62 | MSSLSFSPSMDPPAQQIPLLPSRQPPSNSDASTSPIGPLALLLGRATGRRGTSMLVRETAARELEERRIDWGYSKPVVALDITWNLAFVFVSLGVLIHSVHEKPNTPIRLWIVVYAAQCLVHVVLVWFEFKRRNARRARDMETQQQQEPDGYVTNESDEDDGGQRSFSSVAKRCESVNTMVSLIWWLFGFYWVVAGGNILMQNAPSLYWLAVVFLAFDVFFAVFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDADLSMLPKYRYRVSNEPSPGDGLMVPVETSSRYLTTERVLLCEDAECCICLSPYEDGVELHALPCNHHFHYACITKWLKMNATCPLCKYNILKNCEHV* | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 23276245 | 23280818 | - | CsaV3_5G028180.1 | Csa05g01999 | 530386 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g01999 | 356 | PANTHER | TARGET OF ERK KINASE MPK-1 | 15 | 352 | - | - | |
Csa05g01999 | 356 | Pfam | Ring finger domain | 304 | 346 | IPR001841 | - | |
Csa05g01999 | 356 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE RIE1-LIKE | 15 | 352 | - | - | |
Csa05g01999 | 356 | SUPERFAMILY | RING/U-box | 291 | 351 | - | - | |
Csa05g01999 | 356 | MobiDBLite | consensus disorder prediction | 139 | 166 | - | - | |
Csa05g01999 | 356 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 351 | IPR013083 | - | |
Csa05g01999 | 356 | ProSiteProfiles | Zinc finger RING-type profile. | 305 | 346 | IPR001841 | - | |
Csa05g01999 | 356 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Csa05g01999 | 356 | SMART | ring_2 | 305 | 345 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00920 | Csa-Chr3:7573115 | Csa05g01999 | Csa-Chr5:23276245 | 7.16E-116 | dispersed | |
Csa04g01888 | Csa-Chr4:18651402 | Csa05g01999 | Csa-Chr5:23276245 | 4.59E-82 | dispersed | |
Csa05g01999 | Csa-Chr5:23276245 | Csa07g01299 | Csa-Chr7:12923650 | 5.85E-32 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g01999 | - | - | csv:101211704 | 672.93 |