Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01999 ATGTCCTCCCTATCCTTTTCTCCTTCCATGGACCCTCCCGCTCAACAGATCCCTCTCTTACCTTCCCGTCAGCCCCCCTCCAACTCTGACGCTTCCACTTCCCCAATCGGCCCTCTTGCCCTTCTCTTGGGTCGCGCCACTGGCCGCCGTGGAACTTCTATGCTCGTTCGTGAGACCGCGGCACGTGAACTTGAAGAGCGCCGCATCGATTGGGGCTATTCCAAGCCTGTAGTCGCCCTTGACATTACGTGGAATTTAGCTTTTGTTTTCGTTTCCCTGGGTGTGCTTATTCATTCTGTACATGAAAAACCCAATACGCCAATTCGGCTTTGGATTGTGGTTTATGCGGCTCAGTGCTTGGTGCACGTTGTGCTTGTGTGGTTTGAGTTTAAGAGGAGGAATGCGAGGAGAGCTAGGGATATGGAAACGCAGCAACAGCAGGAGCCTGATGGTTATGTAACTAATGAAAGCGATGAAGACGATGGTGGCCAAAGGAGTTTTTCCAGTGTTGCGAAAAGATGTGAGTCAGTGAACACTATGGTATCGTTAATTTGGTGGTTGTTTGGCTTTTACTGGGTCGTTGCTGGTGGTAACATCCTCATGCAGAATGCTCCATCTTTATACTGGCTGGCTGTTGTATTCCTGGCCTTTGATGTGTTCTTTGCAGTATTTTGTGTTGTTTTGGCATGTTTGATTGGCATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCCATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACCGATGCTGATTTAAGCATGCTTCCTAAGTATAGATATCGAGTGTCCAATGAGCCTTCTCCGGGGGATGGGTTGATGGTTCCAGTAGAGACTAGCAGTAGATACTTGACAACTGAGCGCGTTCTGTTATGCGAGGATGCGGAGTGCTGTATATGTCTTAGTCCATACGAGGATGGAGTCGAGCTTCATGCTCTTCCCTGCAATCACCATTTTCATTATGCGTGCATCACAAAATGGCTGAAGATGAATGCAACATGTCCTCTGTGCAAATATAATATTCTTAAGAATTGTGAACATGTGTAA 1071 47.62 MSSLSFSPSMDPPAQQIPLLPSRQPPSNSDASTSPIGPLALLLGRATGRRGTSMLVRETAARELEERRIDWGYSKPVVALDITWNLAFVFVSLGVLIHSVHEKPNTPIRLWIVVYAAQCLVHVVLVWFEFKRRNARRARDMETQQQQEPDGYVTNESDEDDGGQRSFSSVAKRCESVNTMVSLIWWLFGFYWVVAGGNILMQNAPSLYWLAVVFLAFDVFFAVFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDADLSMLPKYRYRVSNEPSPGDGLMVPVETSSRYLTTERVLLCEDAECCICLSPYEDGVELHALPCNHHFHYACITKWLKMNATCPLCKYNILKNCEHV* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23276245 23280818 - CsaV3_5G028180.1 Csa05g01999 530386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01999 356 PANTHER TARGET OF ERK KINASE MPK-1 15 352 - -
Csa05g01999 356 Pfam Ring finger domain 304 346 IPR001841 -
Csa05g01999 356 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIE1-LIKE 15 352 - -
Csa05g01999 356 SUPERFAMILY RING/U-box 291 351 - -
Csa05g01999 356 MobiDBLite consensus disorder prediction 139 166 - -
Csa05g01999 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 351 IPR013083 -
Csa05g01999 356 ProSiteProfiles Zinc finger RING-type profile. 305 346 IPR001841 -
Csa05g01999 356 MobiDBLite consensus disorder prediction 1 34 - -
Csa05g01999 356 SMART ring_2 305 345 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00920 Csa-Chr3:7573115 Csa05g01999 Csa-Chr5:23276245 7.16E-116 dispersed
Csa04g01888 Csa-Chr4:18651402 Csa05g01999 Csa-Chr5:23276245 4.59E-82 dispersed
Csa05g01999 Csa-Chr5:23276245 Csa07g01299 Csa-Chr7:12923650 5.85E-32 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01999 - - csv:101211704 672.93