Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02010 ATGAAAATCTTGCATTGTTTTCTTCTCTTTTCATTACTAGTCATCATCCATGGCAGAAGCTTCAATAATTTCATGTCTTGCTCCCAAACCCCATATCCAGACCTCTGCTTCCATTACATAAACCCAAACGACAACATACGGACAGCCCATATTGATGAAACTTATCTCATCACCCGTTTTCGAAACTCAGCTATTCAAGCCACTTTGTACCAAGCCATGAAGGTACGTGACCATCTTCGCTCTACCATGGATCTTGGTTCATTTGATGATAACGATAGAAATCATGTCGCTTTAATCGACTGTTTGGAATTCTACGAGGACTCAATTGCAGAGCTCAATCGTTCGACACTCAGTTCCACGAGTGCCAACTCGATCGACCATTCAACGATGCTAAGTGCTTCATTAGCAAACCATCAAACATGTCTAGACGGATTTCGAGATTTCGGATTTTTGGTTGATGATTCGAATAATTTCTTTCTTCCAATTCAAATTATGAGTAACTTCTCAAAATTGGTTAGCAATTCTCTTGCCATCACAAAGGCCATTGCGGCGGCACCCTCCACTAGTTCTTCCACCTCCTGTGGCCAGCCGCTACTAGATGGCTTGTGTCCCGAGTGGGTTTACGATGATGATAAGACGCTTCTCCAGGATATGGTCGGAAAGGGCGCAGATATGGTGGTGGCTCAAGATGGAAGTGGTGATTTTAGGACGATATCGGAGGCAGTGGCCGCAGCAGAGGAGGCGAGGAAGGGAAGTGGAAGTGGAAGGTTTGTTATATATGTAAAAGGTGGGATTTACAAAGAGAATGTTGTGATTGAGAAGAGAATGAAGAATATAATGATGGTTGGAGATGGAATGGATAGAACGATCGTCACAGCCATGAAGAACGTACAAGATGGATCAACAACTTTCCAATCAGCCACTTTTGCGGTGGCCGGCGAAGGATTCATCGCGAAAGATATGACGTTCGAGAACACAGCGGGGCCGGAGAAACACCAAGCCGTGGCACTCCGTTCTAATGCTGATCGCTCAATTTTTTACCGATGCAGCTTTAAGGGCTACCAAGACACTCTATACGCCCACTCCAACCGCCAATTTTACCGTGAATGTCACATTTACGGAACCGTCGACTTCATTTTCGGCGACGGTGTCGTCGTTTTTCAAAATTGTAACATCTTCGTGAGAAAGCCGATGCTGAACCAAAAAAACACCATCACGGCCCAAGCGAGGTCCGACCCGAATGAGAATTCCGGGTTCGTGATCCACAATTCGGTAATCGGAGCGGCGCCGGATTTGAAGCCGGTGCAAGGTTTGTACGGAACTTATTTGGGGAGGCCATGGAAAGCGTATTCGAGGACGGTGATAATGAAGAGCTATATGGACGGTCTGATTGAACCAGCCGGGTGGCTCCCTTGGGCCGGAGATTTCGGTCTCAGGACGGTTTATTATGGGGAGTTTATGAACACTGGTGATGGGGCTAATACGAAAGGGAGGGTGGAGTGGCCGGGATACCATGTGATGACGAGTGCGGTGGAGGCAGAGAGGTTTACCGTGGAGAGTTTCTTGGAAGGAGGAGGTTGGATTCCGGCCACCGGAGTGCCATTTGTAAATGGGCTGTGA 1620 47.16 MKILHCFLLFSLLVIIHGRSFNNFMSCSQTPYPDLCFHYINPNDNIRTAHIDETYLITRFRNSAIQATLYQAMKVRDHLRSTMDLGSFDDNDRNHVALIDCLEFYEDSIAELNRSTLSSTSANSIDHSTMLSASLANHQTCLDGFRDFGFLVDDSNNFFLPIQIMSNFSKLVSNSLAITKAIAAAPSTSSSTSCGQPLLDGLCPEWVYDDDKTLLQDMVGKGADMVVAQDGSGDFRTISEAVAAAEEARKGSGSGRFVIYVKGGIYKENVVIEKRMKNIMMVGDGMDRTIVTAMKNVQDGSTTFQSATFAVAGEGFIAKDMTFENTAGPEKHQAVALRSNADRSIFYRCSFKGYQDTLYAHSNRQFYRECHIYGTVDFIFGDGVVVFQNCNIFVRKPMLNQKNTITAQARSDPNENSGFVIHNSVIGAAPDLKPVQGLYGTYLGRPWKAYSRTVIMKSYMDGLIEPAGWLPWAGDFGLRTVYYGEFMNTGDGANTKGRVEWPGYHVMTSAVEAERFTVESFLEGGGWIPATGVPFVNGL* 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23451164 23454584 + CsaV3_5G028290.1 Csa05g02010 530397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02010 539 Gene3D - 221 539 IPR012334 -
Csa05g02010 539 Pfam Pectinesterase 224 524 IPR000070 GO:0030599|GO:0042545
Csa05g02010 539 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 20 538 - -
Csa05g02010 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 182 IPR035513 -
Csa05g02010 539 CDD PMEI-like_3 26 184 - -
Csa05g02010 539 ProSitePatterns Pectinesterase signature 1. 253 272 IPR018040 -
Csa05g02010 539 SUPERFAMILY Pectin lyase-like 222 538 IPR011050 -
Csa05g02010 539 PANTHER PECTINESTERASE 20 538 - -
Csa05g02010 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 183 IPR035513 -
Csa05g02010 539 Pfam Plant invertase/pectin methylesterase inhibitor 26 178 IPR006501 GO:0004857
Csa05g02010 539 ProSitePatterns Pectinesterase signature 2. 372 381 IPR033131 -
Csa05g02010 539 SMART PMEI_2 20 178 IPR006501 GO:0004857
Csa05g02010 539 TIGRFAM PME_inhib: pectinesterase inhibitor domain 26 181 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00985 Csa-Chr3:7995314 Csa05g02010 Csa-Chr5:23451164 1.46E-144 dispersed
Csa05g02010 Csa-Chr5:23451164 Csa07g01869 Csa-Chr7:18705097 2.95E-158 dispersed
Csa03g00565 Csa-Chr3:4852552 Csa05g02010 Csa-Chr5:23451164 2.87E-146 transposed
Csa03g01619 Csa-Chr3:12092582 Csa05g02010 Csa-Chr5:23451164 4.47E-171 transposed
Csa04g01211 Csa-Chr4:10682119 Csa05g02010 Csa-Chr5:23451164 7.46E-74 transposed
Csa05g00496 Csa-Chr5:3205369 Csa05g02010 Csa-Chr5:23451164 9.61E-171 transposed
Csa05g02010 Csa-Chr5:23451164 Csa05g02685 Csa-Chr5:27748797 6.08E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02010 - K01051 csv:101219120 1073.92