Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g02010 | ATGAAAATCTTGCATTGTTTTCTTCTCTTTTCATTACTAGTCATCATCCATGGCAGAAGCTTCAATAATTTCATGTCTTGCTCCCAAACCCCATATCCAGACCTCTGCTTCCATTACATAAACCCAAACGACAACATACGGACAGCCCATATTGATGAAACTTATCTCATCACCCGTTTTCGAAACTCAGCTATTCAAGCCACTTTGTACCAAGCCATGAAGGTACGTGACCATCTTCGCTCTACCATGGATCTTGGTTCATTTGATGATAACGATAGAAATCATGTCGCTTTAATCGACTGTTTGGAATTCTACGAGGACTCAATTGCAGAGCTCAATCGTTCGACACTCAGTTCCACGAGTGCCAACTCGATCGACCATTCAACGATGCTAAGTGCTTCATTAGCAAACCATCAAACATGTCTAGACGGATTTCGAGATTTCGGATTTTTGGTTGATGATTCGAATAATTTCTTTCTTCCAATTCAAATTATGAGTAACTTCTCAAAATTGGTTAGCAATTCTCTTGCCATCACAAAGGCCATTGCGGCGGCACCCTCCACTAGTTCTTCCACCTCCTGTGGCCAGCCGCTACTAGATGGCTTGTGTCCCGAGTGGGTTTACGATGATGATAAGACGCTTCTCCAGGATATGGTCGGAAAGGGCGCAGATATGGTGGTGGCTCAAGATGGAAGTGGTGATTTTAGGACGATATCGGAGGCAGTGGCCGCAGCAGAGGAGGCGAGGAAGGGAAGTGGAAGTGGAAGGTTTGTTATATATGTAAAAGGTGGGATTTACAAAGAGAATGTTGTGATTGAGAAGAGAATGAAGAATATAATGATGGTTGGAGATGGAATGGATAGAACGATCGTCACAGCCATGAAGAACGTACAAGATGGATCAACAACTTTCCAATCAGCCACTTTTGCGGTGGCCGGCGAAGGATTCATCGCGAAAGATATGACGTTCGAGAACACAGCGGGGCCGGAGAAACACCAAGCCGTGGCACTCCGTTCTAATGCTGATCGCTCAATTTTTTACCGATGCAGCTTTAAGGGCTACCAAGACACTCTATACGCCCACTCCAACCGCCAATTTTACCGTGAATGTCACATTTACGGAACCGTCGACTTCATTTTCGGCGACGGTGTCGTCGTTTTTCAAAATTGTAACATCTTCGTGAGAAAGCCGATGCTGAACCAAAAAAACACCATCACGGCCCAAGCGAGGTCCGACCCGAATGAGAATTCCGGGTTCGTGATCCACAATTCGGTAATCGGAGCGGCGCCGGATTTGAAGCCGGTGCAAGGTTTGTACGGAACTTATTTGGGGAGGCCATGGAAAGCGTATTCGAGGACGGTGATAATGAAGAGCTATATGGACGGTCTGATTGAACCAGCCGGGTGGCTCCCTTGGGCCGGAGATTTCGGTCTCAGGACGGTTTATTATGGGGAGTTTATGAACACTGGTGATGGGGCTAATACGAAAGGGAGGGTGGAGTGGCCGGGATACCATGTGATGACGAGTGCGGTGGAGGCAGAGAGGTTTACCGTGGAGAGTTTCTTGGAAGGAGGAGGTTGGATTCCGGCCACCGGAGTGCCATTTGTAAATGGGCTGTGA | 1620 | 47.16 | MKILHCFLLFSLLVIIHGRSFNNFMSCSQTPYPDLCFHYINPNDNIRTAHIDETYLITRFRNSAIQATLYQAMKVRDHLRSTMDLGSFDDNDRNHVALIDCLEFYEDSIAELNRSTLSSTSANSIDHSTMLSASLANHQTCLDGFRDFGFLVDDSNNFFLPIQIMSNFSKLVSNSLAITKAIAAAPSTSSSTSCGQPLLDGLCPEWVYDDDKTLLQDMVGKGADMVVAQDGSGDFRTISEAVAAAEEARKGSGSGRFVIYVKGGIYKENVVIEKRMKNIMMVGDGMDRTIVTAMKNVQDGSTTFQSATFAVAGEGFIAKDMTFENTAGPEKHQAVALRSNADRSIFYRCSFKGYQDTLYAHSNRQFYRECHIYGTVDFIFGDGVVVFQNCNIFVRKPMLNQKNTITAQARSDPNENSGFVIHNSVIGAAPDLKPVQGLYGTYLGRPWKAYSRTVIMKSYMDGLIEPAGWLPWAGDFGLRTVYYGEFMNTGDGANTKGRVEWPGYHVMTSAVEAERFTVESFLEGGGWIPATGVPFVNGL* | 540 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 23451164 | 23454584 | + | CsaV3_5G028290.1 | Csa05g02010 | 530397 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g02010 | 539 | Gene3D | - | 221 | 539 | IPR012334 | - | |
Csa05g02010 | 539 | Pfam | Pectinesterase | 224 | 524 | IPR000070 | GO:0030599|GO:0042545 | |
Csa05g02010 | 539 | PANTHER | PECTINESTERASE INHIBITOR 5-RELATED | 20 | 538 | - | - | |
Csa05g02010 | 539 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 26 | 182 | IPR035513 | - | |
Csa05g02010 | 539 | CDD | PMEI-like_3 | 26 | 184 | - | - | |
Csa05g02010 | 539 | ProSitePatterns | Pectinesterase signature 1. | 253 | 272 | IPR018040 | - | |
Csa05g02010 | 539 | SUPERFAMILY | Pectin lyase-like | 222 | 538 | IPR011050 | - | |
Csa05g02010 | 539 | PANTHER | PECTINESTERASE | 20 | 538 | - | - | |
Csa05g02010 | 539 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 25 | 183 | IPR035513 | - | |
Csa05g02010 | 539 | Pfam | Plant invertase/pectin methylesterase inhibitor | 26 | 178 | IPR006501 | GO:0004857 | |
Csa05g02010 | 539 | ProSitePatterns | Pectinesterase signature 2. | 372 | 381 | IPR033131 | - | |
Csa05g02010 | 539 | SMART | PMEI_2 | 20 | 178 | IPR006501 | GO:0004857 | |
Csa05g02010 | 539 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 26 | 181 | IPR006501 | GO:0004857 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00985 | Csa-Chr3:7995314 | Csa05g02010 | Csa-Chr5:23451164 | 1.46E-144 | dispersed | |
Csa05g02010 | Csa-Chr5:23451164 | Csa07g01869 | Csa-Chr7:18705097 | 2.95E-158 | dispersed | |
Csa03g00565 | Csa-Chr3:4852552 | Csa05g02010 | Csa-Chr5:23451164 | 2.87E-146 | transposed | |
Csa03g01619 | Csa-Chr3:12092582 | Csa05g02010 | Csa-Chr5:23451164 | 4.47E-171 | transposed | |
Csa04g01211 | Csa-Chr4:10682119 | Csa05g02010 | Csa-Chr5:23451164 | 7.46E-74 | transposed | |
Csa05g00496 | Csa-Chr5:3205369 | Csa05g02010 | Csa-Chr5:23451164 | 9.61E-171 | transposed | |
Csa05g02010 | Csa-Chr5:23451164 | Csa05g02685 | Csa-Chr5:27748797 | 6.08E-123 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g02010 | - | K01051 | csv:101219120 | 1073.92 |