Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02011 ATGGCTCGCTTCAGTGTCACCAAGAAGCTCACATCCCCCATCGATGGCCAGAAACCCGGTACTTCCGGCCTCCGCAAGAAGGTAAAAGTATTCATTCAACCGAACTACTTGGAGAATTTTGTTCAATCAACATTTAATGCATTGACTGCTGAAAATGTCAGAGGGGCTACACTTGTTGTATCTGGAGATGGACGCTATTATTCAAAGGATGCTATTCAGATAATAACTAAGATGGCTGCAGCCAATGGGGTACGACGTATTTGGGTTGGTCAAAATGGTTTGCTTTCAACCCCTGCTGTGTCTGCTGTCATACGTGAAAGAGTTGGTGTTGATGGATCCCGAGCATCAGGAGCATTTATTTTGACTGCAAGTCACAATCCAGGAGGTCCTCATGAGGATTTTGGGATTAAATACAACATGGAAAATGGTGGCCCTGCACCGGAGGGAATTACTGATAAGATCTATGAAAACACGAAAACCATAAAGGAGTACCTAATTGCTGAAGATCTTCCTAATGTGGATATTTCCACAATAGGTGTTTCTAGCTTTGGTGGACCTGAAGGACAATTTGATGTTGAGGTTTTTGATTCAGCTAGTGACTACGTGAAGTTGATGAAGTCAATATTTGATTTTGAATCTATCCGCAAGCTTCTAACTTCTCCCAAATTCTCATTCTGTTTTGATGCTCTACATGGTGTTGGTGGAGCTTATGCAAAACGTATTTTTGTGGAAGAGCTTGGTGCACAAGAAAGCTCATTACTGAACTGTGTACCTAAGGAGGACTTTGGAGGAGGTCATCCTGACCCCAATTTGACTTATGCCAAGGAATTGGTTGCTCGTATGGGATTGGGTAAATCAAGCTCTGGAGAACCTCCAGAATTTGGTGCTGCTGCTGATGGTGATGCAGATCGTAATATGGTCCTTGGTAAAAGGTTTTTTGTCACTCCTTCGGACTCTGTTGCCATTATTGCTGCTAATGCTGTTGAAGCTATTCCATACTTCTCTGCTGGTTTGAAGGGTGTTGCCAGGAGCATGCCAACCTCTGCTGCACTAGACGTGGTCGCCAAAAACTTGAAGTTGAAGTTTTTTGAGGTTCCCACTGGTTGGAAATTTTTTGGTAATTTAATGGATGCAGGAATGTGCTCAGTCTGTGGGGAAGAAAGTTTTGGAACTGGATCTGACCATATTCGTGAAAAAGATGGAATATGGGCAGTTCTGGCTTGGTTATCCATTCTTGCTTATAAAAACAAGGGAAACCTTGATGGTGGGAAGCTTGTTTCAGTTGAAGACATAGTTCGCCAACATTGGGCCACCTATGGTCGTCATTATTATACTAGATACGATTATGAGAATGTTGACGCTGGAGCAGCAAAGGAACTGATGGAAAATCTGGTGAAGCTGCAATCTTCACTTGCCGAAGTGAATGGAATTATCAAGGGAATCCGTTCAGATGTGTCAAAGGTTGTCCATGGTGATGAATTTGAGTATAAAGATCCGGTTGATGGTTCCATCTCCAAGCACCAGGGTATTCGATATTTGTTTGAGGATGGTTCACGACTGGTGTTCCGCCTATCTGGAACTGGTTCTGAAGGTGCAACAATTCGGCTCTACATCGAGCAATATGAGAAAGATCCATCAAAAATCGGGAGAGATTCTCAGGAAGCTCTTGCTCCCCTGGTGGAAGTTGCTCTTAAGCTATCAAAAATGCAAGAATTCACTGGCCGATCCTCCCCCACTGTCATTACATAA 1749 43.34 MARFSVTKKLTSPIDGQKPGTSGLRKKVKVFIQPNYLENFVQSTFNALTAENVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRIWVGQNGLLSTPAVSAVIRERVGVDGSRASGAFILTASHNPGGPHEDFGIKYNMENGGPAPEGITDKIYENTKTIKEYLIAEDLPNVDISTIGVSSFGGPEGQFDVEVFDSASDYVKLMKSIFDFESIRKLLTSPKFSFCFDALHGVGGAYAKRIFVEELGAQESSLLNCVPKEDFGGGHPDPNLTYAKELVARMGLGKSSSGEPPEFGAAADGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKNLKLKFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKGNLDGGKLVSVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMENLVKLQSSLAEVNGIIKGIRSDVSKVVHGDEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKIGRDSQEALAPLVEVALKLSKMQEFTGRSSPTVIT* 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23455292 23465358 - CsaV3_5G028300.1 Csa05g02011 530398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02011 582 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 17 164 IPR005844 GO:0005975|GO:0016868
Csa05g02011 582 Gene3D - 313 411 - -
Csa05g02011 582 SUPERFAMILY Phosphoglucomutase, first 3 domains 199 313 IPR016055 GO:0005975|GO:0016868
Csa05g02011 582 PANTHER BNAA09G30060D PROTEIN 4 115 - -
Csa05g02011 582 PANTHER BNAA09G30060D PROTEIN 114 582 - -
Csa05g02011 582 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 200 308 IPR005845 GO:0005975
Csa05g02011 582 SUPERFAMILY Phosphoglucomutase, C-terminal domain 441 582 IPR036900 GO:0016868|GO:0071704
Csa05g02011 582 SUPERFAMILY Phosphoglucomutase, first 3 domains 300 446 IPR016055 GO:0005975|GO:0016868
Csa05g02011 582 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 316 439 IPR005846 GO:0005975|GO:0016868
Csa05g02011 582 Gene3D - 6 204 - -
Csa05g02011 582 CDD PGM1 11 582 - -
Csa05g02011 582 MobiDBLite consensus disorder prediction 1 21 - -
Csa05g02011 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 117 131 IPR005841 GO:0005975|GO:0016868
Csa05g02011 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 222 241 IPR005841 GO:0005975|GO:0016868
Csa05g02011 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 258 271 IPR005841 GO:0005975|GO:0016868
Csa05g02011 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 292 307 IPR005841 GO:0005975|GO:0016868
Csa05g02011 582 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 118 127 IPR016066 GO:0000287
Csa05g02011 582 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 491 543 IPR005843 GO:0016868|GO:0071704
Csa05g02011 582 SUPERFAMILY Phosphoglucomutase, first 3 domains 5 228 IPR016055 GO:0005975|GO:0016868
Csa05g02011 582 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 4 115 IPR045244 GO:0004614|GO:0005975
Csa05g02011 582 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 114 582 IPR045244 GO:0004614|GO:0005975
Csa05g02011 582 Gene3D - 422 582 - -
Csa05g02011 582 Gene3D - 205 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02011 K01835 pgm; phosphoglucomutase [EC:5.4.2.2] - csv:101218883 1153.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00557 Csa-Chr5:3615870 Csa05g02011 Csa-Chr5:23455292 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g464 . . . . . . Bma14g01897 . . . . . . . . . Cpe01g01839 . . . . . . . . . . . . . . . . Cone6ag0384 Cone9ag0411 . Csa05g02011 . . Blo06g01007 Blo11g00973 . . . . . . . Cmo04g02216 Cmo15g01007 Cma04g02117 Cma15g00965 Car04g02059 Car15g00912 Cpe13g00359 . Bhi12g00924 . . . . . . Cla01g00622 Cam01g0650 Cec01g0643 Cco01g0668 Clacu01g0638 Cmu01g0612 Cre09g1890 Lsi09g00672 . Chy09g00838 Cme09g01370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005872 2 2 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39