Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02013 ATGGCCGCCAACAAATTTGCCACCATCTTGCACAGAAACTCCAACAAAATCACCCTTATTTTAGTTTACGCTCTTCTTGAATGGGTTCTCATCTTTCTTCTTCTTCTTCATGGTCTTTTCTCTTACCTGATCGTTAAATTTGCAGAGTGGTTTGGGCTTAAGCGACCCTGTTTGTGGTGTTCTAGAGTCGACCATGTTTTCGAGCCTCAGAGAAAGCAGTCTTATAGAGATCTTCTTTGTGAAGGTCATGCTATGGAGATTTCTAATCTGGGCTACTGTTCGAATCATCGGAAACTGTCGGAGTTTCGAGATTTATGCGAGGATTGCTCGTCCTCTTCCAAGTCTAATGAGTTCTATCAGATTTCTAAGAGCTTTCCGTTTTTTGATGATGAGAAGGAGGATTTCAGGACCTGTTCTTGCTGTGGGGAAACTTTGAAGGGTCGATTGTTTTCCCCTTGTATTTTGATTAAACCGAACTGGGGGGATTTGGATTATACCCAGAAAGGGAATTTGATTTCTGAGACGGAAACTGATGAAATTCATGTTTCTCAATCGGAAGATGTCAGCGGAAACAGAGGAATCTCCATTGTTTCCGGTGGGGAAGAGGGAGAGAAAAACTCCACTTGCTCTGTTTGTGGCTGTGGTTGTAAAGATTCAGCGGTTCACGAGGATGATGATGATGATAGAGCTGATATTAGTGCTCAAAAAGATGGGGGTTTTCTTGAGCTGGCTGAAGATCTGACCATTTGTAATCAGGAAACAGTTGAAGTTGGATGTGAGAAAGAGGATGAATTGCCTGAGACTGTTCCTAATCATCTTGAGTTCTACATTGATCGGGGCGATGATCGGCGGTTGATCCCAGTTGATTTGATCGATTTTTCGGCCCCTGATGACGATAATAGCACTAGCAACATCTTAAGCCAAGTGAAAGATGAGGAACAAGAGCAAGAGGATTGTGGGAATGAAGATGTTGTTTTGGATTTTGCTTCAAATTTTGAGAATCGAAGGCATGGTGTGAGTGAAGCTTGGGAAGTTATTTCAGGAGAGAGACTGGCAGAGTTTCTCTCTGCTTCTCTTCATGAGAACAAGCAGCGAGTTGAAGAGGTGGAAGCCATGGATGTGGAGGAAGATCCATTAGTGGGAGTAGGAAAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGCTGATGCTTCCATTGATGAATCAAGTCAAGCTCCAGCCAGTGATGCTCATAAAGAAGAACTCGAAGAGTTGGTGGTAGCGACAAGACAACCGGATTCAGATCTTCATGAAGATTTTCACATGTGGAGTGATGAACTTGAAGTAGAGATTTCAATTGGCACTGATATTCCCGACCACGAACCGATTGATGAGATTCAAACTCAAATTGACCTTCCTCCGCATCCTGACTTACAAGAAGATCCTTCCCCAAGTTCATCATTGGATGTTGACAATATGCAAGATCCTAACATAGTTGAGGAAGTCGAGGAAGCCGAGGAAGTTATGGAAGAGGAAAAGTTCAAGATCTTTTCTATGGAAACAAGTTCTCAACCTTCAGACAATCACAAACCGTCGAGTTCTGAGGTTAATGAGGATGAGGAAGAAGATAAAGTTCCTGGTACAGAAGTGGAAGAGTTCAAGATCTTGTCCGTGGAAACGAGTTCTCATCCTTCAGACAATCACAAATCGTCGAGTTCTGAGGTCAATGAGAATGAGGAAGAAGATAAAGTTCCTGATACACCCACTTCAATGGATAGTCTCCACCAGCTACACAAGAAGCTGCTATTACTAGACAGAAAAGAATCTGGGACTGAAGAGTCTTTGGATGGAAGCGTCATAAGCGAGACCGAAGGTGGGGATGGTGTGTTGACCCTTGAGAAATTGAAGTCAGCGTTGAGAACCGAAAGAAAGGCTTTGAATGCTTTATATGCAGAGCTAGAAGAAGAGAGAAGTGCTTCGGCCATAGCAGCCAACCAAACAATGGCAATGATAAATAGGCTTCAAGAGGAGAAAGCAAGTATGCAAATGGAAGCTTTGCAGTATCAGAGAATGATGGAGGAGCAATCTGAGTATGATCAGGAAGCTTTGCAGCTTTTGAATGAGCTCGTAGTAAAGAGGGAAAAGGAAAAGCAAGAGCTCGAGAAAGAAATCGAAATTTACCGAAAAAAGCTTCAGGATTATGAAGCCAAAGAAAAAATTGCATTGTTAAGGATCAGAAAAGAAGGGAGCATCCGGAGTAGAAATTCTTCAGTTTCTTGTAGCAATGCCGACGATAGCGATGGACTATCTATCGATTTGAACACTGAGGCAAAGAAAGATGAAGATTTGTTTTCGAACCAAGAAACAGAGAATCAAAACACCCCAGCTGAGGCAGTCCTTTATTTGGAGGAAACTTTGGCAAACTTTGAGGAAGAAAGGCTGTCCATTCTAGAGGAACTGAAGATGTTGGAAGAGAAGCTCTTCACCTTGAGTGATGAAGAACAACAATTTGAAGACATTGACCATTATTGTGAACGAAATGGGAATGGTTACGATAAGAACTCGGATTATTCTCCGGGAACAAATGGATTTGAAAACGGTCATAATGCCAAGGAAATGAATGGAAAACATTATCCAGAGAGGAGAGCAATGAGCACGAAAGCCAAAAGACTTCTCCCACTTTTCGACGATGTAGTCGATGCAGATGTTGTTGAAGATGTAACAAACGGAGAAGAACAAGGGTTCGACTCCATTTCTATCCAAAAATCTTTAGACAACAAATTCGACACAGAATTCAGGAGGGTTGCTGTTGAGGAAGAGGTCGATCATGTCTACGAGAGATTACAAGCACTCGAAGCAGATAGAGAATTTCTAAAGCATTGCATTGGCTCCCTAAGAAAAGGAGACAAAGGCTTAGAACTTCTCCAAGAAATCTTACAGCATCTCCGTGATCTAAGGAATGTTGATCTTCAGTTGAAGAACATGGGAGACGGTGTCGTAGCGTGA 2988 42.24 MAANKFATILHRNSNKITLILVYALLEWVLIFLLLLHGLFSYLIVKFAEWFGLKRPCLWCSRVDHVFEPQRKQSYRDLLCEGHAMEISNLGYCSNHRKLSEFRDLCEDCSSSSKSNEFYQISKSFPFFDDEKEDFRTCSCCGETLKGRLFSPCILIKPNWGDLDYTQKGNLISETETDEIHVSQSEDVSGNRGISIVSGGEEGEKNSTCSVCGCGCKDSAVHEDDDDDRADISAQKDGGFLELAEDLTICNQETVEVGCEKEDELPETVPNHLEFYIDRGDDRRLIPVDLIDFSAPDDDNSTSNILSQVKDEEQEQEDCGNEDVVLDFASNFENRRHGVSEAWEVISGERLAEFLSASLHENKQRVEEVEAMDVEEDPLVGVGKEEEKEEEEEEEADASIDESSQAPASDAHKEELEELVVATRQPDSDLHEDFHMWSDELEVEISIGTDIPDHEPIDEIQTQIDLPPHPDLQEDPSPSSSLDVDNMQDPNIVEEVEEAEEVMEEEKFKIFSMETSSQPSDNHKPSSSEVNEDEEEDKVPGTEVEEFKILSVETSSHPSDNHKSSSSEVNENEEEDKVPDTPTSMDSLHQLHKKLLLLDRKESGTEESLDGSVISETEGGDGVLTLEKLKSALRTERKALNALYAELEEERSASAIAANQTMAMINRLQEEKASMQMEALQYQRMMEEQSEYDQEALQLLNELVVKREKEKQELEKEIEIYRKKLQDYEAKEKIALLRIRKEGSIRSRNSSVSCSNADDSDGLSIDLNTEAKKDEDLFSNQETENQNTPAEAVLYLEETLANFEEERLSILEELKMLEEKLFTLSDEEQQFEDIDHYCERNGNGYDKNSDYSPGTNGFENGHNAKEMNGKHYPERRAMSTKAKRLLPLFDDVVDADVVEDVTNGEEQGFDSISIQKSLDNKFDTEFRRVAVEEEVDHVYERLQALEADREFLKHCIGSLRKGDKGLELLQEILQHLRDLRNVDLQLKNMGDGVVA* 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23491256 23495690 - CsaV3_5G028320.1 Csa05g02013 530400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02013 995 MobiDBLite consensus disorder prediction 369 419 - -
Csa05g02013 995 MobiDBLite consensus disorder prediction 445 591 - -
Csa05g02013 995 ProSiteProfiles GTD-binding domain profile. 624 722 IPR007656 -
Csa05g02013 995 Coils Coil 800 820 - -
Csa05g02013 995 Coils Coil 382 402 - -
Csa05g02013 995 Coils Coil 658 731 - -
Csa05g02013 995 MobiDBLite consensus disorder prediction 386 400 - -
Csa05g02013 995 PANTHER MYOSIN-BINDING PROTEIN 3 1 991 - -
Csa05g02013 995 MobiDBLite consensus disorder prediction 564 582 - -
Csa05g02013 995 Coils Coil 928 948 - -
Csa05g02013 995 Pfam Zein-binding 628 718 IPR007656 -
Csa05g02013 995 PANTHER MYOSIN-BINDING PROTEIN 2 1 991 IPR039306 GO:0017022
Csa05g02013 995 Coils Coil 626 653 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02013 - - - csv:101220314 1830.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01093 Csa-Chr3:8665307 Csa05g02013 Csa-Chr5:23491256 4.13E-19 dispersed
Csa04g01175 Csa-Chr4:10182409 Csa05g02013 Csa-Chr5:23491256 2.56E-12 dispersed
Csa05g02013 Csa-Chr5:23491256 Csa06g02329 Csa-Chr6:20913654 3.58E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g461 . . . . . . . . . . . . . . . . Cpe01g01841 . . . . . . . . . . . . . . . . Cone6ag0387 Cone9ag0414 . Csa05g02013 . . . Blo11g00974 . . . . . . . . Cmo15g01004 . Cma15g00963 . Car15g00909 Cpe13g00361 . Bhi12g00920 . . . . . . Cla01g00620 Cam01g0648 Cec01g0640 Cco01g0666 Clacu01g0636 Cmu01g0609 Cre09g1892 Lsi09g00670 . Chy09g00840 Cme09g01372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006446 1 3 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 1 38