Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02014 ATGTTTTCTTGCCCAAAATGTTCGCCTCTCCAATTTCAGGGCACACTCTCAATCACTCCCACCAAGCTTTTCCCTGTTGTTGGCCCTATGGGAATTCCTAAACCCACCCACCCATCGCTCTTCCTCTGTCGTCTTCGTTTCTCCTCAGATTCTCTCTCGAAACGCCTTGTTTTCAGGAGGGTTAGCAGTGATGGTGGTGGTGATTCTTCACAGCATCAGTCTGCTACTCCTGACATCAAAGATGTACAGAATGATTCTTCTAGTGTTGGACACAGTTATGTGGCATTATTTGTCCGGATGCTCGGCTTAGCTAATGATCCTCTTGATAGAGAACAAGCAATCATAGCTTTATGGAAATATTCTCTTGGAGGGAAGAAGCACATAGATGCCATCATGCAGTTTCCTGGATGCATAAATCTAGCAGTAAATCTTCTTAGGTCAGAGTCAATCCCTACGTGTGAAGCAGCTGCTGGCCTTCTGCGGTCAATATCTCAGGTGAACTTATACCGAGAATCAGTTGCAGAAAGTGGAGCAATTGAAGAGATAACTGGCTTGCTTTGTCAACCGTCCTTGACTCCCGAGGTGAAGGAGCAAAGCATCTGTGTCTTGTGGAATTTGTCAGTAGATGAAAAACTCAGAATTAAAATTGCAAACACTGATATTCTGCCATTGCTTAGTAAGAATCTTGATGATGAGAACATGAAGGTGAAGGAAGCAGCTGGAGGGGTTTTAGCAAATCTGGCTTTGAGCCCTTGTAACCACGGGGTTATTGTCGAATCAGGCTTAATTACTAAACTGGCGTATCAGTTGAAAGCTGAGGCAGACAGCTCAAAAATTATGAGAAAGGAAGCAAGAAATGCATTGCTTGAACTTTCTAAAGATGGATATTATAGAATTCTTGTCATAGAGGAAGGACTGGTTCCAGTACCAATTCTTGGTGCTGCTGCTTATAAATCCTTCAGACCAGGCCTGCATTCATGGCCCAGGTTGCCTGATGGCATTGAAATTGAACAATCCACAAAACCTTCAAGATATGGTGCCTCTCAATTACTCCTTGGGTTAAATGTTGATAAGAATGCAAACATAGAAGAACGCAAGATAAATGCAATTGTTGGCCGGACACAGCAACAGTTTCTGGCTCGAATTGGTGCCATAGAAATCGAAGATCTGAAGGATTCTCAATCTGAATCATCTTCCAGAAACCATCTTACACTCTTACCTTGGATAGATGGTGTTGCTCGACTAGTTTTGATCCTTGAACTTGAGGATGATAATGCCATAACGAGAGCTGCTGTGTCAATAGCTGATGCCTCTATCAACGAACACATGCGTATTTCATTCAAGGAAGCTGGAGCAATCAAATATTTAGTAAAGTTTTTAGATTATACGAATGATTCTGTCAAATGGGCTGCAGTTCAAGCTCTAGAGAGACTGTCGATTAGTAATGTGGTTTGCCAGGCAATTGAAAATGAAGGTGCACTTGGTCCTTTGCTCAGTATTTTAAAGTTCTCAGGTATCCCCGAAAATGTGATGGAGAAGACCCTCAATATACTTTCTCGGATCTTGGACCCTAGTAAAGAAATGAAGTCAAAGTTTTACAGTGGACCGGTAAATGGATCTCAAGGGGGACAACATTCAGAAGGAAATTTTGAAGCTTCTATCAGGAAAGATGTGCTGGATGCTGGTGTTGTTTCTCGCTTTGTTGAGATTTTGAACACCTCATCACCAAACTTGAAACAGAAAGCTGCTTCTATCCTGGAATTTGTTTCTATCATGGACCCAAGCATGGAACTAATCGATCCTGTGGAGATAGAGTTGGGATTGTCGGCTGTTTTCCAGCTTGGAGTTTCAATAGATTCTGATGGTGAAGTTTGGCAGCCCGAAAGATATGCCCTTGAAGTTGAAGAAGCTGGTCTGGCAATTTCAGCAGCCTCCCGACTATTAACAAAGCTTCTAGACTCTGAAAAGTTCAGCAACAAAATAAACTCCACGCATTTCACTAAATTGCTTCGTCGAGTCCTTAAGTCAGACATTCCCATCAACCACAAAGATTGGATTGCTGCTTGCCTAATCAAACTCAGCTCCGTCTTGACTCTGAACACAGATTTTGGAGATCCTATCAACATGGAGGTCACTCTATACGAAACAATACCAAGACTTATTGAACAGATGCAAAGCTCCTTCTCATTGGAAGTTCAGGAATCTGCTGTTGTGGAGCTGAATAGAATAGTCTCTGAAGGAATAGTCAATGCTACCCGAGCTGTTGCTTCGAAAGGCGGTATCTTTCCATTAGTAAAGCTGATTGATGAAGGAAGTGAGAGAGCAGTAGAAGCAGCCTTAGCTATACTGTATAATCTGAGCATGGACAGTGAAAATCATCCAGCAATCGTAGCTGCTGGAGCTGTGCCAGCATTGAGGAGAATTGCTCTATCACAACGTGTGCAGTGGCAACAAGCTCTTTATTTGTTGAGGACGTTGCCTACATGA 2487 42.66 MFSCPKCSPLQFQGTLSITPTKLFPVVGPMGIPKPTHPSLFLCRLRFSSDSLSKRLVFRRVSSDGGGDSSQHQSATPDIKDVQNDSSSVGHSYVALFVRMLGLANDPLDREQAIIALWKYSLGGKKHIDAIMQFPGCINLAVNLLRSESIPTCEAAAGLLRSISQVNLYRESVAESGAIEEITGLLCQPSLTPEVKEQSICVLWNLSVDEKLRIKIANTDILPLLSKNLDDENMKVKEAAGGVLANLALSPCNHGVIVESGLITKLAYQLKAEADSSKIMRKEARNALLELSKDGYYRILVIEEGLVPVPILGAAAYKSFRPGLHSWPRLPDGIEIEQSTKPSRYGASQLLLGLNVDKNANIEERKINAIVGRTQQQFLARIGAIEIEDLKDSQSESSSRNHLTLLPWIDGVARLVLILELEDDNAITRAAVSIADASINEHMRISFKEAGAIKYLVKFLDYTNDSVKWAAVQALERLSISNVVCQAIENEGALGPLLSILKFSGIPENVMEKTLNILSRILDPSKEMKSKFYSGPVNGSQGGQHSEGNFEASIRKDVLDAGVVSRFVEILNTSSPNLKQKAASILEFVSIMDPSMELIDPVEIELGLSAVFQLGVSIDSDGEVWQPERYALEVEEAGLAISAASRLLTKLLDSEKFSNKINSTHFTKLLRRVLKSDIPINHKDWIAACLIKLSSVLTLNTDFGDPINMEVTLYETIPRLIEQMQSSFSLEVQESAVVELNRIVSEGIVNATRAVASKGGIFPLVKLIDEGSERAVEAALAILYNLSMDSENHPAIVAAGAVPALRRIALSQRVQWQQALYLLRTLPT* 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23513918 23520244 - CsaV3_5G028330.1 Csa05g02014 530401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02014 828 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 37 828 - -
Csa05g02014 828 SMART arm_5 440 480 IPR000225 GO:0005515
Csa05g02014 828 SMART arm_5 209 249 IPR000225 GO:0005515
Csa05g02014 828 SMART arm_5 481 523 IPR000225 GO:0005515
Csa05g02014 828 SMART arm_5 789 828 IPR000225 GO:0005515
Csa05g02014 828 SMART arm_5 125 165 IPR000225 GO:0005515
Csa05g02014 828 SMART arm_5 250 293 IPR000225 GO:0005515
Csa05g02014 828 SMART arm_5 703 745 IPR000225 GO:0005515
Csa05g02014 828 SMART arm_5 166 208 IPR000225 GO:0005515
Csa05g02014 828 SMART arm_5 551 591 IPR000225 GO:0005515
Csa05g02014 828 SMART arm_5 748 788 IPR000225 GO:0005515
Csa05g02014 828 MobiDBLite consensus disorder prediction 64 86 - -
Csa05g02014 828 Gene3D - 627 827 IPR011989 -
Csa05g02014 828 MobiDBLite consensus disorder prediction 62 86 - -
Csa05g02014 828 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 177 210 IPR000225 GO:0005515
Csa05g02014 828 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 759 801 IPR000225 GO:0005515
Csa05g02014 828 Gene3D - 79 315 IPR011989 -
Csa05g02014 828 SUPERFAMILY ARM repeat 91 304 IPR016024 -
Csa05g02014 828 SUPERFAMILY ARM repeat 410 812 IPR016024 -
Csa05g02014 828 Gene3D - 387 615 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02014 - - - csv:101220075 1587.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02014 Csa-Chr5:23513918 Csa03g00758 Csa-Chr3:6697008 8.13E-08 dispersed
Csa05g02014 Csa-Chr5:23513918 Csa02g01443 Csa-Chr2:13832014 3.54E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02014 . . . . . . . . . . . . Cmo15g00939 . Cma15g00902 . Car15g00841 Cpe13g00362 . Bhi12g00918 . . . Hepe02g2639 . . Cla01g00619 Cam01g0647 Cec01g0639 Cco01g0665 Clacu01g0635 Cmu01g0608 Cre09g1893 Lsi09g00669 . Chy09g00841 Cme09g01373
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011868 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 30