Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02016 ATGAAGAGGGAGCATCACCATCTTCATCCACGTCCGGAGCCGCCTTCCATGGCTGTCGTCCCTAATGGGGAGAGTTTTTTGAATACCGGTAAGGCTAAGCTCTGGGAAGAGGAAGCCCAGCTCGATGGAGGAATGGATGAGCTTCTTGCTGTTTTGGGTTATAAGGTTAAGTCCTCGGACATGGCGGATGTTGCTCAGAAGCTTGAACAACTTGAAGAAGCTATGTGTCAAGTTCAGGATACTGGTCTTTCTCATCTTGCTTTTGATACTGTTCATTATAATCCTTCTGATCTGTCTACTTGGCTTGAAAGTATGCTCACCGAGCTCCATCCGATGCCTAATTTTGCGACGCCGCCACCTCCTTCGCAGCTGGACGATCCTTCGTTTTTAGCTCCGGCGGAATCCTCCACCATCACTTCCATTGATTATGACCCTCAGCGGCAAACTAGCAGCCGGATTTTCGAGGAATCTTCTAGTTCTGATTACGACCTTAAAGCTATCACGAGCAGTGCGATTTATTCACCGAGAGAGAATAAACGTTTGAAATCTTCCGAGTCGGACTCAGATGTGTTCTCTACCTCGGCGATTAGGGCTTCCGATTCTGTAACTCGTCCTGTCGTCCTCGTCGATTCGCAGGAGAACGGAATTCAACTGGTCCATGCGTTGATGGCTTGCGCCGAAGCCGTACAGCAGAACAATCTGAATATAGCGGAGGCTCTGGTGAAGCGAATCGGTTACTTGGCGGTTTCTCAAGCAGGAGCGATGAGGAAGGTCGCCACGTTCTTCGCTGAAGCGTTGGCTCGCCGAATCTACAGGCTCTGCCCTGAGAATCCCCTCGATCATTCAGTGTCCGATAGGCTTCAGATGCATTTCTACGAGAGCTGTCCCTATCTGAAATTCGCGCATTTCACCGCGAATCAAGCGATTCTCGAAGCTTTCGAAGGGAAGAAACGTGTTCACGTAATCGATTTCTCGATGAACCGAGGGATGCAATGGCCAGCTCTGATTCAAGCCCTAGCTCTACGGCCGAACGGTCCTCCAGCCTTCCGCCTCACCGGGATTGGTCCTCCGGCGCCGGATAACTCAGATTACCTCCAAGAAGTAGGCTGGAAACTGGCTGAATTAGCCGAAGCTATCCATGTGGACTTCGAATACAGAGGATTTGTGGCGAATAGTTTAGCAGATCTAGACGCGTCGATGCTGGAGCTCCGACCGAGCGAGGTTGAATCGGTGGTGGTGAACTCAGTATTCGAGTTACATAAGCTCCTGGCTCGGCCTGGTGCCCTGGAAAAGGTTCTGTCGGTGGTGAAACAGATGAAGCCGGAGATCATGACGGTGGTGGAGCAAGAAGCGAATCACAACGGTCCGGTATTCGTGGACCGGTTCACTGAGTCACTCCATTACTACTCAACGCTTTTTGACTCGTTGGAAGGCTCCCCCAACAACCAGGATAAAATCATGTCCGAAATGTACCTTGGAAAGCAAATTTGCAACGTCGTGGCTTGTGAAGGTGCCGACCGTGTCGAACGCCACGAGACCTTAACTCAGTGGCAAACTCGGTTATCCTCCGCCGGGTTCGAACCCATCCACCTCGGCTCAAACGCATTCAAACAAGCAAGCATGCTCCTCGCCCTATTCGGCAGTGGAGAGGGGTACCGGGTGGAAGAGAACAACGGATCACTAATGCTAGGATGGCACACTCGCCCACTCATAGCCACCTCCGCTTGGAAAATCGGCAACAACCCGGTGGTCGCTAAGTGA 1761 51.56 MKREHHHLHPRPEPPSMAVVPNGESFLNTGKAKLWEEEAQLDGGMDELLAVLGYKVKSSDMADVAQKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWLESMLTELHPMPNFATPPPPSQLDDPSFLAPAESSTITSIDYDPQRQTSSRIFEESSSSDYDLKAITSSAIYSPRENKRLKSSESDSDVFSTSAIRASDSVTRPVVLVDSQENGIQLVHALMACAEAVQQNNLNIAEALVKRIGYLAVSQAGAMRKVATFFAEALARRIYRLCPENPLDHSVSDRLQMHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNRGMQWPALIQALALRPNGPPAFRLTGIGPPAPDNSDYLQEVGWKLAELAEAIHVDFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKLLARPGALEKVLSVVKQMKPEIMTVVEQEANHNGPVFVDRFTESLHYYSTLFDSLEGSPNNQDKIMSEMYLGKQICNVVACEGADRVERHETLTQWQTRLSSAGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLMLGWHTRPLIATSAWKIGNNPVVAK* 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23548902 23552351 + CsaV3_5G028350.1 Csa05g02016 530403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02016 586 PANTHER DELLA PROTEIN GAI1-RELATED 22 578 IPR030006 GO:0003712|GO:0005634
Csa05g02016 586 MobiDBLite consensus disorder prediction 1 21 - -
Csa05g02016 586 Coils Coil 54 74 - -
Csa05g02016 586 ProSiteProfiles GRAS family profile. 209 577 IPR005202 -
Csa05g02016 586 SMART DELLA_2 46 119 - -
Csa05g02016 586 Pfam GRAS domain family 218 577 IPR005202 -
Csa05g02016 586 Gene3D - 44 109 IPR038088 -
Csa05g02016 586 Pfam Transcriptional regulator DELLA protein N terminal 46 113 IPR021914 -
Csa05g02016 586 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 22 578 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02098 Csa-Chr1:18212758 Csa05g02016 Csa-Chr5:23548902 8.09E-147 dispersed
Csa05g01594 Csa-Chr5:18792392 Csa05g02016 Csa-Chr5:23548902 0 dispersed
Csa05g02016 Csa-Chr5:23548902 Csa05g02830 Csa-Chr5:28763181 2.03E-70 dispersed
Csa05g02016 Csa-Chr5:23548902 Csa06g00941 Csa-Chr6:7561913 3.33E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31780 PF03514 GRAS 1.80E-135 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02016 K14494 - csv:101204164 1142.87