Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa05g02017 | ATGGAACACTTTTTGGGTCTTCTCCGGATTCGGGTGCTGCGCGGTGTTAATCTCGCTATTCGTGATACCCGTAGCAGCGATCCCTATGTCCTCGTCACCATGGGCGACCAGAGGCTGAAGACTCGTGTGGTGAAAAATAATTGCAATCCTGAATGGAATGATGAGTTGACTCTTTCAGTTGCAGATCTCAGGACTCCGATTGGTTTATCAGTATATGACAAAGACACACTAACAGACCATGACAAAATGGGAGATGCCGAGATCGACATCGGACCATACATCGAATGTTTGAGGATGGGACTACAGAGCCTCCCAGATGGTTGCGTTGTCAGGAGATTATATCCAAGCAGAACAAACTGTTTAGCTGATGAGAGCCAATGTGTTTGGCAAAAGGGGAAAATTGTACAGAACATGATCTTGAGGTTGAAGAATGCAGAGTGTGGTGAGGTGGCAGTTCAGCTCGAATGGATCAACGTTCCTGGTGCTAAGGGCTTGCCAGACGGAAGTACGAGCAACTTCTGA | 522 | 47.32 | MEHFLGLLRIRVLRGVNLAIRDTRSSDPYVLVTMGDQRLKTRVVKNNCNPEWNDELTLSVADLRTPIGLSVYDKDTLTDHDKMGDAEIDIGPYIECLRMGLQSLPDGCVVRRLYPSRTNCLADESQCVWQKGKIVQNMILRLKNAECGEVAVQLEWINVPGAKGLPDGSTSNF* | 174 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 23557147 | 23560019 | - | CsaV3_5G028360.1 | Csa05g02017 | 530404 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa05g02017 | 173 | CDD | C2_ArfGAP | 5 | 148 | - | - | |
| Csa05g02017 | 173 | Pfam | C2 domain | 6 | 92 | IPR000008 | - | |
| Csa05g02017 | 173 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 163 | IPR044562 | - | |
| Csa05g02017 | 173 | SMART | C2_3c | 7 | 102 | IPR000008 | - | |
| Csa05g02017 | 173 | ProSiteProfiles | C2 domain profile. | 1 | 106 | IPR000008 | - | |
| Csa05g02017 | 173 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 157 | IPR035892 | - | |
| Csa05g02017 | 173 | Gene3D | C2 domain | 4 | 168 | IPR035892 | - | |
| Csa05g02017 | 173 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 10 | 1 | 163 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g02120 | Csa-Chr3:17897273 | Csa05g02017 | Csa-Chr5:23557147 | 4.20E-72 | dispersed | |
| Csa05g01141 | Csa-Chr5:11692393 | Csa05g02017 | Csa-Chr5:23557147 | 1.19E-77 | dispersed | |
| Csa05g02017 | Csa-Chr5:23557147 | Csa06g03849 | Csa-Chr6:30542624 | 1.44E-38 | dispersed | |
| Csa05g02017 | Csa-Chr5:23557147 | Csa01g00717 | Csa-Chr1:4552877 | 2.50E-73 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa05g02017 | - | - | csv:101204404 | 350.517 |