Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02033 ATGGGTTTCCGTCAATCTCTCAGTTCCCTCCAAAGATTATTTCCAAGAACAAGTTCTTTCCAGTATGCATCAGCAAGATCAGTTTCTTGTTCAAAAACAATCACTAAAAATCAAACTTCAATCTGCATTTCATCTCACTGTAACGAGCATTCAACTTTGCTTATTCCAAATCGCAATTACACCTCTCATCGCTCCACCCATCATCGTATTGAGCACAGCAAGCAGGATTTGAAAGCCAGCCAAAAATCTATCGTGGAAAGTGATGAAATCGCCCAGGATGCTGAAAAGTTTTGTAAGTTAATATCAAAAAACCCCAATTCTTGCATTGAATCATTGCTTGATGGTGCTCCAATGGAGTTGTCGCCCGCTCTGATTGTGGAGGTGTTGAAGAAGCTGAGCAATGCGGGGTTTCTTGCGCTTTCGTTCTTCAGGTGGGCAGAGAAGCAGAAAGGCTTCAAACACACTACAGAAAGCTACAACTTGTTAATTGAAGCATTGGGTAAGATCAAACAGTTCAATGTGATTTGGAATTTGGTGAGTGATATGAAACGCAAAGGAATTTTAAGTAGAGAAACATTTGCTTTAATAACTCGGAGATATGCCCGAGCTAGAAAAGTTAAGGAAGCAGTCGAGTCATTTGAGAAGATGGAGAAGTTTGGTTTTCAAATGGGAGTATCAGATTTCAATAGATTACTTGATACTCTATGCAAATCCAGAAACGTTAAGAAAGCACAAGAGGTGTTTGATAAAATGAAGCATGGAAGGTTCAAGCCTGATATCAAGTCCTACACGATTCTTTTAGAAGGGTGGGGTCAGGATCAGAACTTGTTGAAGTTGAATGAGGTTTATAGGGAGATGAGAGACGAAGGATTTGAACCCGATGTTGTTACTTTCGGTATTCTTATCAATGCACATTGCAAGGCAAGGAAGTATGATGAAGCAATTCGGTTGTTTCACGAAATGGAAGCAAAAAATATCAAGCCCTCACCTCATGTGTTCTGTACCTTAATCAATGGTTTGGGTTCTGAGAAGAGATTGAAAGAAGCTCTAGAGTTTTTCGAACAGTTGAAGTTAAGCGGCTTTGCTCCGGAGGCACCGACTTATAATGCTGTTGTGGGGGCTTACTGTTGGTCAATGAAGATGGCTTATGCATATAGGATGGTAGACGAGATGAGGAAATCTGGCGTTGGTCCTAACTCGAGGACATATGATATCATATTACATCACTTGATAAAGGGTAGGAAATCAAAGGAAGCTTATTCTGTTTTCCAGAGAATGAGTAGGGAGCCTGGGTGTGAACCAACTTTGAGTACATATGACATTATGATAAGAATGTTTTGCAACGAAGAAAGAGTGGATATGGCGATTCAGATTTGGGATGAAATGAAGGCTAAAGGAGTTCTTCCCGGAATGCACTTGTTCTCAACGTTGATTAATAGCTTGTGCCATGAGCACAAGTTGGAGGATGCTTGCACATACTTTCAAGAGATGTTGGATGTTGGTATTCGGCCGCCAGCAACCATGTTTAGCAATTTGAAACAGGCTCTTCTTGATGATGGTAGAAAGGATACTGCTTTACTTATGGCTGAGAAGATAAAAAAACTGAGAAAGGCGCCATTGGTTGGGTGA 1629 40.7 MGFRQSLSSLQRLFPRTSSFQYASARSVSCSKTITKNQTSICISSHCNEHSTLLIPNRNYTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGRKDTALLMAEKIKKLRKAPLVG* 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23670184 23672853 + CsaV3_5G028520.1 Csa05g02033 530420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02033 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Csa05g02033 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Csa05g02033 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Csa05g02033 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 434 IPR002885 -
Csa05g02033 542 Gene3D Tetratricopeptide repeat domain 77 253 IPR011990 GO:0005515
Csa05g02033 542 Gene3D Tetratricopeptide repeat domain 272 413 IPR011990 GO:0005515
Csa05g02033 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Csa05g02033 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Csa05g02033 542 Pfam PPR repeat 158 187 IPR002885 -
Csa05g02033 542 Pfam PPR repeat 199 221 IPR002885 -
Csa05g02033 542 PANTHER OS01G0505500 PROTEIN 88 539 - -
Csa05g02033 542 TIGRFAM PPR: pentatricopeptide repeat domain 296 329 IPR002885 -
Csa05g02033 542 TIGRFAM PPR: pentatricopeptide repeat domain 262 295 IPR002885 -
Csa05g02033 542 TIGRFAM PPR: pentatricopeptide repeat domain 332 363 IPR002885 -
Csa05g02033 542 TIGRFAM PPR: pentatricopeptide repeat domain 402 435 IPR002885 -
Csa05g02033 542 TIGRFAM PPR: pentatricopeptide repeat domain 438 469 IPR002885 -
Csa05g02033 542 TIGRFAM PPR: pentatricopeptide repeat domain 158 187 IPR002885 -
Csa05g02033 542 TIGRFAM PPR: pentatricopeptide repeat domain 367 399 IPR002885 -
Csa05g02033 542 TIGRFAM PPR: pentatricopeptide repeat domain 473 504 IPR002885 -
Csa05g02033 542 TIGRFAM PPR: pentatricopeptide repeat domain 228 260 IPR002885 -
Csa05g02033 542 Pfam PPR repeat family 367 411 IPR002885 -
Csa05g02033 542 Pfam PPR repeat family 438 483 IPR002885 -
Csa05g02033 542 Pfam PPR repeat family 228 269 IPR002885 -
Csa05g02033 542 Pfam PPR repeat family 293 340 IPR002885 -
Csa05g02033 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Csa05g02033 542 Gene3D Tetratricopeptide repeat domain 414 537 IPR011990 GO:0005515
Csa05g02033 542 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 88 539 - -
Csa05g02033 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Csa05g02033 542 SUPERFAMILY HCP-like 200 356 - -
Csa05g02033 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02033 - - - csv:101216600 1088.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00818 Csa-Chr1:5158228 Csa05g02033 Csa-Chr5:23670184 1.22E-18 dispersed
Csa02g00504 Csa-Chr2:3546393 Csa05g02033 Csa-Chr5:23670184 4.24E-15 dispersed
Csa03g04358 Csa-Chr3:38050696 Csa05g02033 Csa-Chr5:23670184 8.12E-13 dispersed
Csa04g00147 Csa-Chr4:837875 Csa05g02033 Csa-Chr5:23670184 3.01E-07 dispersed
Csa04g02026 Csa-Chr4:20400711 Csa05g02033 Csa-Chr5:23670184 1.17E-13 dispersed
Csa05g01585 Csa-Chr5:18718569 Csa05g02033 Csa-Chr5:23670184 7.55E-48 dispersed
Csa05g02033 Csa-Chr5:23670184 Csa06g02123 Csa-Chr6:18944426 1.97E-134 dispersed
Csa05g02234 Csa-Chr5:25068253 Csa05g02033 Csa-Chr5:23670184 8.61E-11 dispersed
Csa07g02118 Csa-Chr7:20336599 Csa05g02033 Csa-Chr5:23670184 1.67E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g404 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02033 . . . . Bda07g01441 . Bpe11g01613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012295 1 4 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 29