Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02038 ATGAGCAGCGAAGTTATGGGAGATGGCCGGAGGCGGGCCTTAGCGCTGCAACTTCTTGACCTTGTACGTGACTTTGTTCTGATGTCAGGGAGGTCGATCGCTGGCGCTGGAGACACTATGAAGAAAGATTGCACCGATCTCATTCGTCGGATCGCCCTCCTGGTCCATCTGGCGGAGGAGATCACAAACTTCTGTAGTGGCAGCTGGGACAATTTTGAGAAATCGAATGATGATGGGTCTTCTTCTTCTTCTTTATCTTCTTGGTTGGATTGCCTTTCGGAAGTGGTTGGAGCAATTCAGGCGGCGAAGCGGCTTCTGTACACGGCTTTGACTTTCTCTCCAAACGACGAGGAGGGTTGTGTGACTTCGACGGAGGAAGCTACCAAAAAATTGGTTCTACAATTCAAGCATGTGACAACAATATTGGAAACTGCACTTTCAAATCTGCCATATGATAAATTTTGTGTCTCAGACGAAGTACAAGAACAGGTTGATTTGGTTAGAGCTCAATTGAGGAGAGCATCACACAAGTATGAATCTATGTCTAACCCTGCAGAAAAGAAGCTTCAAGCAAGAAGTTCCATAAAATGGATGATCAATAATGATGTCAGGAGCATGTCAAGCGTTGATGATGGAGATGAGTCTCAGCATCGTCCTCGAAACCGCGATTATCTGACTAGTCTTGATTCGGTGAATTCTTGTTTTGATGAGTGTTCAAGTGTTGTTCATTCTGATATGGAAGATGTTGTAGCCAGCAGGAGCCAAGATGAGGTTAAGAAGCATCTTGAAACTGAAATTCCTGAAAACTTCTTATGCCCCATTTCCTATGAGTTGATGTTGGATCCTGTCATCGTCTCGACGGGACAGACATATGAAAGATCCAACATACAAAATTGGATAGACAGAGGAAATAGAATATGTCCAAAAACTCAGGAGCAGCTCCAAGCACTAATCCTCACTCCAAATTTTATAATGAGAAAACTAATATATGAATGGTGTGAAGAGCACAATGTGAAGCTGGAGGAAGGACTAACCAACAAGAAACTTAAGAAGTGTAGATCATTTGAAGACGACTGCCGAAGGACTCCTCTGCCGATCAATACTCTGGTTCGACACCTCTCATTTGGGTCAGTTCAAGAGCAAAAGACCGCCGTGACGGAGATCCGACAGCTATCGAAAAGCAGCTCAGATCATAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAGCTTGTTAACCTTTTAACTTCAAAAGACGTTATAACACAAGAAAATGCAATTTCTTGCATTCTTAACCTTTCACTTCATGAGCAAAACAAGAGACTTATTATGCTTTCTGGTGCAGTTTCATACATTTCCCAAGTCCTCAAAGTTGGGAGCATGGAAGGGAGAGAATGTGCAGCTGCGACGATTTATAGTTTGTCGTTAGCCGATGAGAACAAGGCAGTAATCGGGGCTTCGGATGTGATACCAGACTTAATAGAAATTCTCGACATCGGTAGCCCGAGAGGGCAGAAAGATGCTGCAGGAGCTCTATTGAATTTGTGCATGTACCAAGGGAACAAGGGCAGGGCTTTGAAAGCTGGGATTGTCAAACCATTGTTGAAAATGCTCTCTGATTCAAATGGTTCTTTGGTTGATGATGCTCTCTATATAATGTCGATTCTTTGCGGCCATCCGGATGCAAAAGCTACAATGGGGAATGCAAATTCACTGCTTGTTTTGACTGATGTTTTGAAGACGGGGTCGCCTCGCAGCAAGGAGAATGCAGCTGCTGTTCTGCTTGCATTCTGCAAGGGAGATAGGGAGAAGCTGGAATGGTTGACAAGGCTCGGCGCGATTGCACCTTTGATGAAACTTGGGGAGAACGGCACGGGGAGAGCAAGGCGAAAGGCTGCTACATTGTTGGACCAACTCGGAAAATCATGA 1929 44.69 MSSEVMGDGRRRALALQLLDLVRDFVLMSGRSIAGAGDTMKKDCTDLIRRIALLVHLAEEITNFCSGSWDNFEKSNDDGSSSSSLSSWLDCLSEVVGAIQAAKRLLYTALTFSPNDEEGCVTSTEEATKKLVLQFKHVTTILETALSNLPYDKFCVSDEVQEQVDLVRAQLRRASHKYESMSNPAEKKLQARSSIKWMINNDVRSMSSVDDGDESQHRPRNRDYLTSLDSVNSCFDECSSVVHSDMEDVVASRSQDEVKKHLETEIPENFLCPISYELMLDPVIVSTGQTYERSNIQNWIDRGNRICPKTQEQLQALILTPNFIMRKLIYEWCEEHNVKLEEGLTNKKLKKCRSFEDDCRRTPLPINTLVRHLSFGSVQEQKTAVTEIRQLSKSSSDHRVEIAEAGAIPQLVNLLTSKDVITQENAISCILNLSLHEQNKRLIMLSGAVSYISQVLKVGSMEGRECAAATIYSLSLADENKAVIGASDVIPDLIEILDIGSPRGQKDAAGALLNLCMYQGNKGRALKAGIVKPLLKMLSDSNGSLVDDALYIMSILCGHPDAKATMGNANSLLVLTDVLKTGSPRSKENAAAVLLAFCKGDREKLEWLTRLGAIAPLMKLGENGTGRARRKAATLLDQLGKS* 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23691822 23695867 + CsaV3_5G028570.1 Csa05g02038 530425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02038 642 CDD RING-Ubox_PUB 270 312 IPR045210 -
Csa05g02038 642 Gene3D - 362 482 IPR011989 -
Csa05g02038 642 ProSiteProfiles U-box domain profile. 265 339 IPR003613 GO:0004842|GO:0016567
Csa05g02038 642 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 406 448 IPR000225 GO:0005515
Csa05g02038 642 Pfam U-box domain 266 337 IPR003613 GO:0004842|GO:0016567
Csa05g02038 642 PANTHER U BOX DOMAIN-CONTAINING 22 639 - -
Csa05g02038 642 SMART arm_5 395 435 IPR000225 GO:0005515
Csa05g02038 642 SMART arm_5 518 558 IPR000225 GO:0005515
Csa05g02038 642 SMART arm_5 477 517 IPR000225 GO:0005515
Csa05g02038 642 SMART arm_5 559 599 IPR000225 GO:0005515
Csa05g02038 642 SMART arm_5 436 476 IPR000225 GO:0005515
Csa05g02038 642 Gene3D - 483 641 IPR011989 -
Csa05g02038 642 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 22 639 - -
Csa05g02038 642 Pfam Armadillo/beta-catenin-like repeat 395 434 IPR000225 GO:0005515
Csa05g02038 642 SUPERFAMILY RING/U-box 261 339 - -
Csa05g02038 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 351 IPR013083 -
Csa05g02038 642 Coils Coil 157 177 - -
Csa05g02038 642 SMART Ubox_2 269 332 IPR003613 GO:0004842|GO:0016567
Csa05g02038 642 SUPERFAMILY ARM repeat 366 639 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04286 Csa-Chr3:37521661 Csa05g02038 Csa-Chr5:23691822 7.30E-18 dispersed
Csa05g01046 Csa-Chr5:10336742 Csa05g02038 Csa-Chr5:23691822 0 dispersed
Csa05g02038 Csa-Chr5:23691822 Csa05g02787 Csa-Chr5:28504015 5.63E-131 dispersed
Csa05g02038 Csa-Chr5:23691822 Csa01g02400 Csa-Chr1:21307088 6.19E-130 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02038 - - cmax:111489474 952.97