Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02044 ATGGCATTTTTTGATCCTATCAATTCATCCAACTTGGATCTCTCCATTTCCATGCCTGGCTTTTCTTCTTCACCACTGACCACTCGTCCTTTGTTCGTGAGAGAATTGGACATGAACCGAGTACCCGCGGAGGGAGAAGCAGAAGAAGATTGGGCGAGGGGGCCGAGCGTGGAAGAGGGGGAAGAAGAAAGCTCCATTAATAATAATGGAGGTACTCAACCAAGGAAGAAGCTTCGTCTGTCGAAAGATCAGTCCCGCCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCTAAGCAAAAGGAAGGTTTGGCTATGGAGTTGAAGCTGAAGCCAAGACAAGTTGAAGTTTGGTTTCAGAATCGTAGGGCCAGGAGCAAACTGAAGCAAACCGAGTTGGAATGCGAATATATGAAGAGATGTTTTGGATCATTAACGGAGCAAAACCGTCGGTTGCAGTGGGAACTGGAGGAGCTAAGAGCCATCAAGGTTGCTCCCCCTGCCGTTGTCTCACGACACAATCGACACCCGCCCCTCTTGATGAGGTCTACTATAACCATATGTCCCCGGTGTGAACGTATAATTTCCAGTAAGAACACTGTTGCTGATCAGACCGCCACCACTGCGACTGCGATGCCGTCGAAGGTGGTTTTGTCCGCCCTCCAATTGCGGCAGCCGTCGCAAGCTTGTTGA 699 48.93 MAFFDPINSSNLDLSISMPGFSSSPLTTRPLFVRELDMNRVPAEGEAEEDWARGPSVEEGEEESSINNNGGTQPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMKRCFGSLTEQNRRLQWELEELRAIKVAPPAVVSRHNRHPPLLMRSTITICPRCERIISSKNTVADQTATTATAMPSKVVLSALQLRQPSQAC* 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23758676 23761283 - CsaV3_5G028630.1 Csa05g02044 530431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02044 232 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Csa05g02044 232 SMART HOX_1 73 135 IPR001356 GO:0003677
Csa05g02044 232 MobiDBLite consensus disorder prediction 61 75 - -
Csa05g02044 232 Pfam Homeobox associated leucine zipper 131 163 IPR003106 GO:0006355|GO:0043565
Csa05g02044 232 Gene3D - 68 137 - -
Csa05g02044 232 SMART halz 131 174 IPR003106 GO:0006355|GO:0043565
Csa05g02044 232 CDD homeodomain 74 132 IPR001356 GO:0003677
Csa05g02044 232 Pfam Homeodomain 75 129 IPR001356 GO:0003677
Csa05g02044 232 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Csa05g02044 232 MobiDBLite consensus disorder prediction 43 79 - -
Csa05g02044 232 SUPERFAMILY Homeodomain-like 62 132 IPR009057 -
Csa05g02044 232 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 6 214 - -
Csa05g02044 232 PANTHER - 6 214 - -
Csa05g02044 232 MobiDBLite consensus disorder prediction 43 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01220 Csa-Chr5:12811044 Csa05g02044 Csa-Chr5:23758676 8.69E-74 dispersed
Csa05g02044 Csa-Chr5:23758676 Csa07g02054 Csa-Chr7:19866731 3.13E-44 dispersed
Csa05g02044 Csa-Chr5:23758676 Csa06g03058 Csa-Chr6:26295272 2.71E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31781 PF00046 Homeodomain 1.10E-16 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02044 K09338 - csv:101206325 446.432