Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02048 ATGCTCCACTGCCAAAGAAGAGCTTCGAGAGCTCTTGTCCCTTCTGTGGCGGAAAATGGGTGTTTTGTTAAAGAAGATGTTCGTCAGAAAATTCCCACAAAGAAGCAGCTGGTTGATCCTCACCGGCAAGGCTTGATCATTGAAGGAGGTGTTGGGTATAGACAAACTGTTGTAATCAGATCGTATGAAGTTGGTCCTGATAAGACTGCAACTGTGGAGAGCGTCATGAATCTTTTGCAGGAAACAGCACTTAATCATGTTTGGATGTCTGGGCTTCTCAGCAATGGTTTTGGGGCTACCCATGGCATGATGAGGAATAATCTTATCTGGGTTGTTTCACGTATGCTTGTCGAAGTAGACCACTATCCGATATGGGGCGAGATTGTTGAAATCGATACATGGGTTGGGGCATCCGGGAAAAATGGAATGAGAAGGGACTGGCTTATTAGAAGTCAAGCAACAGGCTACGTTTATGCTCGAGCGACAAGCACATGGGTGATGATGAACCAGCAAACAAGACGACTCTCCAAAATGCCAGAAGAAGTAAGGGCAGAAATTTCTCCTTGGTTTATTGAAAAGCAAGCAATCAAAGAAGATGCCCCCGAGAAAATTTCCAAGTTAGATGATAAAGCTAAGTACATGAACTCTGACTTGAAGCCAAAGAGAAGTGATCTGGACATGAACCATCATGTCAACAATGTCAAATACCTAAGATGGATGCTAGAGACGATACCTGACCATGTTTTGGAGTCTCATCAACTTTCTAGTATCATATTGGAGTATAGAAGGGAATGCGGAAGCTCTGATATAGTTCAATCACTATGTGAGCCAGATGAAGATGGAATCCTCAGAGATGTGGAGATGATAGAAGACAGAGAAATCGGTCTACTAAACGGGTTTTCCTTGGCGTCTGAAATTCTCAAAGGTGGACTCTTGGGATCTTTTGACAAAGGAACACAAAGGTATACACATCTTCTACAAATTGAAGGGGAGGCTAAGAATGAAGAGATAGTGAGGGGAAGAACCACATGGAAGAAAAAGCTTACCACTATACCATTCTCCACAGAGTAA 1071 43.04 MLHCQRRASRALVPSVAENGCFVKEDVRQKIPTKKQLVDPHRQGLIIEGGVGYRQTVVIRSYEVGPDKTATVESVMNLLQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMLVEVDHYPIWGEIVEIDTWVGASGKNGMRRDWLIRSQATGYVYARATSTWVMMNQQTRRLSKMPEEVRAEISPWFIEKQAIKEDAPEKISKLDDKAKYMNSDLKPKRSDLDMNHHVNNVKYLRWMLETIPDHVLESHQLSSIILEYRRECGSSDIVQSLCEPDEDGILRDVEMIEDREIGLLNGFSLASEILKGGLLGSFDKGTQRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTE* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23793211 23796249 + CsaV3_5G028670.1 Csa05g02048 530435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02048 356 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 214 344 IPR029069 -
Csa05g02048 356 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 15 348 - -
Csa05g02048 356 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 52 199 IPR029069 -
Csa05g02048 356 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 15 348 IPR045023 GO:0006633|GO:0016297
Csa05g02048 356 Pfam Acyl-ACP thioesterase 52 346 IPR002864 GO:0006633|GO:0016790
Csa05g02048 356 Gene3D Hotdog Thioesterase 46 351 - -
Csa05g02048 356 CDD 4HBT 53 169 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02048 - - - csv:101205853 707.983
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00150 Csa-Chr2:1043362 Csa05g02048 Csa-Chr5:23793211 4.21E-98 dispersed
Csa05g02048 Csa-Chr5:23793211 Csa07g01527 Csa-Chr7:15625414 5.26E-81 dispersed
Csa05g02048 Csa-Chr5:23793211 Csa01g02084 Csa-Chr1:17950674 2.35E-101 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g381 . . . . . . . . Cmo04g01550 . . . . . Sed01g3001 . . Bhi07g01260 Tan04g0796 Cmetu10g0315 Lac13g0542 . . . . . . . . . . . . . Cone9ag0441 . Csa05g02048 Chy10g01188 Cme10g00216 . . . . . . . . . Cmo04g02188 Cmo15g00977 Cma04g02086 Cma15g00937 Car04g02025 Car15g00879 . . Bhi12g00865 . . . . . Lcy10g1458 Cla01g00587 Cam01g0613 Cec01g0604 Cco01g0629 Clacu01g0605 Cmu01g0578 Cre09g1927 Lsi09g00636 . Chy09g00878 Cme09g01412
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008529 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 35