Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02054 ATGCATAAAAGCACCACTTCTGCGTCGAATACTATTGCTGCTGCGACTACTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCACCAATCTTTGCTCCAAAGCAATCCGTGCCGGTCTCTCTTCCAGTGACCCTCTATGGTGAGTCGACTCACGCGGATTCATCAATCTCGGCTTCCAAATCGATAAACAATCATTTCTATCAAACGCGTGTCGTACAAGATCACCAGGAAATGGTTAATCGCCATAGCCTCTGTCTCACTCAGCTTCGAGAAGCAACCGAAGAAGCCGATGCTCTTCGACAAGAGAATATCCACCTCAGAAGTATTAATCACGAGCTAAGCAAACACCTCAGCCTTCTGATCCAGGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTTTAATTTTGCGGAAGGATTCCGCGGACTCAGTCTAGCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAGGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGTGGAAGGGTAGAGGGAGTTGAGGTGGAGAGATTTTCGCTCCCGAAGAGCATCTCCGTGAGGTCCAATGGATACTTGAAAATGGCACAAACCGGAACCAGCCAGGGCGGAAAGATCCGCGCCTCATCTCGCCCCAGAACTGCAAGTCCTGTCAAAGTTACGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTAGAACTTGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTTTGCAACAAATGGCAGGAAACAGGCAGCTGCCCCTATGGAGACCACTGCCAGTTCGCCCATGGAATAGAGGAGCTTCGGCCTGTGATCCGCCACCCCCGCTACAAGACAGAAGTCTGCCGGATGGTCCTCGCCGGAGTTGTCTGCCCTTATGGTCACCGCTGCCACTTCCGCCATGCTCTCACTGACCAGGAAAGGCTGATGGGGACACTCAAGCCAACCTGCAGGACCTCCACCACCCCTAAGCTGGACAGGTGA 1053 51.85 MHKSTTSASNTIAAATTMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPVTLYGESTHADSSISASKSINNHFYQTRVVQDHQEMVNRHSLCLTQLREATEEADALRQENIHLRSINHELSKHLSLLIQASVQKQYGSSDQAPPFNFAEGFRGLSLAEKGASSSAWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQTGTSQGGKIRASSRPRTASPVKVTKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGTLKPTCRTSTTPKLDR* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23862912 23866616 - CsaV3_5G028730.1 Csa05g02054 530441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02054 350 SUPERFAMILY CCCH zinc finger 258 293 IPR036855 GO:0046872
Csa05g02054 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 287 IPR000571 GO:0046872
Csa05g02054 350 SMART c3hfinal6 261 288 IPR000571 GO:0046872
Csa05g02054 350 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Csa05g02054 350 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 56 338 - -
Csa05g02054 350 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Csa05g02054 350 Gene3D - 295 331 - -
Csa05g02054 350 Gene3D - 255 294 - -
Csa05g02054 350 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872
Csa05g02054 350 PANTHER CCCH ZINC FINGER/TIS11-RELATED 56 338 IPR045877 GO:0003729
Csa05g02054 350 SUPERFAMILY CCCH zinc finger 295 329 IPR036855 GO:0046872
Csa05g02054 350 Coils Coil 101 121 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa05g02054 Csa05g01229 CCT
Csa05g02054 Csa05g01229 ECH
Csa05g01229 Csa05g02054 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02574 Csa-Chr2:22477477 Csa05g02054 Csa-Chr5:23862912 1.62E-60 dispersed
Csa05g02054 Csa-Chr5:23862912 Csa07g00875 Csa-Chr7:6711422 3.30E-08 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31782 PF00642 zf-CCCH 5.40E-12 CL0537 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02054 K18753 - csv:101203274 660.603