Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02059 ATGCTTGTGGGTCTGTTTCTCATTCTTTTGTGCTGTTCTGATTGTCTTGTTCTTGTGAGCTCTTTGAATGATGAAGGGTTTGTGCTTTTAACACTTAAACAGTCCATTTCACTAGACCCAGATGGGGCTTTTAGCTATTGGGATTCTTCTAATGAAACCCCTTGTTCTTGGAATGGGGTTGGTTGTCTAAATGATATTGTTGTCTCTGTTACCATTCCTAAGAGGAATTTGTATGGATTTCTTCCTTCTTCTCTTGGTGCTCTTTCTGGGCTTCGCCATTTGAATTTAAGAAACAATAGGCTTTTTGGGAGTTTGCCTTTTCAGCTCTTCTCTGCTCAAGCTCTACAGAGCTTGGTTCTTTATGGGAATTCCTTTTCTGGATTTGTTCCAAATGGGATTGGGAAGCTTAAATACCTTCAAACTTTGGATTTATCTCAAAATTTATTCAATGGGTCATTACCGGCTTCAATTATACAATGCAGTAGACTTAAAACCATTGATGTTAGTCACAATAACTTCACTGGTTCACTACCACATGGGTTTGGAACTAGTTTTAGTTATTTGGAGAAACTGGATCTTTCATTTAACACATTTGATGGTTCCCTTCCTAGTGATTTGGGGAATTTGTCTAGTTTACAGGGCACTTTTGACTTATCTCATAATCTTTTTTCTGGTTCAATTCCATCTAGCCTAGGAAACCTACCTGAAAAGGTTTACATTGATCTCAGCCATAACAATTTGAGTGGTCCAATACCTCAAAATGGTGCTCTGATGAACAGAGGACCCACTGCTTTTATTGGTAATCCTGGGCTCTGTGGTTCCCCATTGAAGAGCAAATGTTCTTCAGGAACTCTGAGTGCAAGCTCACCGTCCTTGCTTCCGTTTCTCCCAGACGATCACTCGCCAGGGATTTCTGGCGTCTATGCTGAGAAAACCAGGGGATTGAGTAAGAGTGCTGTGATTGCAATAGTACTTGGTGATGTGGTTGGTATATGTTTGATTGGGTTATTGTTCTCATATTGTTATTCTAGAGCATGTTATCCAAGGACCAAAGACAAAATGGGGCATAATTCTGATAAGGGAAAAGGAAGAAATGAGTGTTTATGTTTCAGGAAGGATGAATCTGAGTCGGTTTCACAGAATGTGGAGCAGTATGATCTTGTGCCATTGGATGCACAAGTAGGATTTGATCTTGATGAACTTCTCAAGGCATCAGCCTTTGTTATTGGCAAAAGTGGGATTGGTATAGTATATAAAGTGGTACTTGAAGATGGAGTTACATTGGCCGTGCGACGATTGGGCGAAGGCGGTTCACAAAGGTTCAAAGAATTTCAAACAGAAGTAGAAGCAATAGCAAAGCTAAGGCATTCCAATCTTGTCACTCTTAGAGCCTATTATTGGTCTGTTGATGAGAAACTGCTCATTTATGAATTCATACCCAATGGAAACCTTGCCACTGCTATTCATGGAAAGCCAGGAACGGTATCTTTCACGCCGTTATCCTGGTCTGCTAGATTAAAGATCATGGAAGGAATTGCTAAAGGAATTGTCTATCTCCATGAATTCAGCCCCAAGAAGTATGTTCATGGAGATTTGAAACCCAACAATATACTGCTTACTCAAAACATGGAAGCCAAAATTTCTGACTTCGGCCTCGCTCGACTTGCGAATATTGCAGGAGGAACCCCAACCTTACAATCAAGTCGAATGGCGTCCGAGAAACCATTAGATCCAAAACAACCGAAAACTGTAACATCCGAGATTATTTGTAGTTCATCTTCCAACACAGGAACTTGTTATCAAGCCCCTGAATCACTCAAAGTCTTAAAACCATCCCAAAAATGGGATGTTTACTCATATGGTATGATCTTACTTGAAATGATCACAGGAAGATTTCCATTAATCCAAGTGAGTTCTTCCTCTGAAATGGATCTTGTTCATTGGATTCAACTATGCATTGAAGAACAAAAGCCACTTTCAGAAGTAATAGATCCACATCTAATTCAAGATGCAGATAAAGAAGAAGAGTTCATCTCTATTCTCAAAATTGCTATGTCTTGTGTTCATGGAAGCCCTGAAAGGAGACCTACCATGAGACACGTTTCTGATGCCATTGAAAGGCTATCGTCGTCTTCATCATCATCAAGGAACTAA 2154 40.02 MLVGLFLILLCCSDCLVLVSSLNDEGFVLLTLKQSISLDPDGAFSYWDSSNETPCSWNGVGCLNDIVVSVTIPKRNLYGFLPSSLGALSGLRHLNLRNNRLFGSLPFQLFSAQALQSLVLYGNSFSGFVPNGIGKLKYLQTLDLSQNLFNGSLPASIIQCSRLKTIDVSHNNFTGSLPHGFGTSFSYLEKLDLSFNTFDGSLPSDLGNLSSLQGTFDLSHNLFSGSIPSSLGNLPEKVYIDLSHNNLSGPIPQNGALMNRGPTAFIGNPGLCGSPLKSKCSSGTLSASSPSLLPFLPDDHSPGISGVYAEKTRGLSKSAVIAIVLGDVVGICLIGLLFSYCYSRACYPRTKDKMGHNSDKGKGRNECLCFRKDESESVSQNVEQYDLVPLDAQVGFDLDELLKASAFVIGKSGIGIVYKVVLEDGVTLAVRRLGEGGSQRFKEFQTEVEAIAKLRHSNLVTLRAYYWSVDEKLLIYEFIPNGNLATAIHGKPGTVSFTPLSWSARLKIMEGIAKGIVYLHEFSPKKYVHGDLKPNNILLTQNMEAKISDFGLARLANIAGGTPTLQSSRMASEKPLDPKQPKTVTSEIICSSSSNTGTCYQAPESLKVLKPSQKWDVYSYGMILLEMITGRFPLIQVSSSSEMDLVHWIQLCIEEQKPLSEVIDPHLIQDADKEEEFISILKIAMSCVHGSPERRPTMRHVSDAIERLSSSSSSSRN* 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23897339 23900408 - CsaV3_5G028780.1 Csa05g02059 530446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02059 717 Gene3D Transferase(Phosphotransferase) domain 1 479 717 - -
Csa05g02059 717 CDD STKc_IRAK 409 708 - -
Csa05g02059 717 SUPERFAMILY Protein kinase-like (PK-like) 408 703 IPR011009 -
Csa05g02059 717 Gene3D Ribonuclease Inhibitor 22 181 IPR032675 -
Csa05g02059 717 ProSiteProfiles Protein kinase domain profile. 403 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02059 717 Pfam Leucine rich repeat 90 148 IPR001611 GO:0005515
Csa05g02059 717 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 711 - -
Csa05g02059 717 Pfam Protein kinase domain 409 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02059 717 Gene3D Phosphorylase Kinase; domain 1 371 478 - -
Csa05g02059 717 SUPERFAMILY L domain-like 23 276 - -
Csa05g02059 717 SMART serkin_6 407 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02059 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Csa05g02059 717 Gene3D Ribonuclease Inhibitor 182 266 IPR032675 -
Csa05g02059 717 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Csa05g02059 717 MobiDBLite consensus disorder prediction 565 584 - -
Csa05g02059 717 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 6 711 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02567 Csa-Chr2:22452986 Csa05g02059 Csa-Chr5:23897339 0 dispersed
Csa03g01823 Csa-Chr3:13971854 Csa05g02059 Csa-Chr5:23897339 1.79E-133 dispersed
Csa05g02059 Csa-Chr5:23897339 Csa04g01704 Csa-Chr4:16425507 7.06E-97 dispersed
Csa02g02737 Csa-Chr2:23851434 Csa05g02059 Csa-Chr5:23897339 8.15E-120 transposed
Csa05g02220 Csa-Chr5:24983100 Csa05g02059 Csa-Chr5:23897339 0 transposed
Csa05g02059 Csa-Chr5:23897339 Csa05g02641 Csa-Chr5:27467713 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78261 PF00069 Pkinase 1.60E-34 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02059 - - csv:101203259 1373.61