Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02065 ATGAGTGGCGGTGCTGGTGGCACTTCTCGAAGCACTAGGGATTTGATCTGCAACGCCGGTGCCGGTGCTGCTGCAGGTTCTATAGCAGCCACGTTCGTCTGCCCTTTAGATGTCATCAAGACGAGGCTGCAAGTGCATGGTCTCCCTTCTGGTCAAAGTGGAGGTAGTATCATCATCACTAGCCTACAAAGCATAATGCGTTCTGAAGGTTTCAGGGGAATGTATCGTGGCCTTTCTCCAACAATAGTAGCACTTCTTCCAAACTGGGCTGTCTACTTCACAGTTTATGAGCATCTAAAAGGCCTACTTCATTCAGATGGGGACGATGGTCATCAACTCTCGTTTGGGGCAAATATGCTTGCTGCTGCTGGGGCTGGGGCATCTACTGCCATTGCAACAAATCCTTTGTGGGTTGTTAAGACCCGACTCCAAACACAGGGAATGAGGCCTGGTGTGGTTCCTTACACAGGCATGGTTTCAGCATTTACCAGGATTGTACGTGAAGAAGGAATTCGTGGGCTTTACAGTGGTATCATCCCTTCATTGGTTGGGATAAGTCATGTTGCAATTCAATTTCCTGCATACGAAAGGCTCAAATCGTATATTGCAAAAAGAGAAAACACAACCGTTGACAAACTAAGTCCAGGACATTTAGCTATTGCCTCCTCATTGTCGAAAGTTACGGCCTCGGTAATGACTTACCCACATGAGGTAGTTCGTTCCCGGCTACAAGAGCAAGGCCAAGCCAGAAACATTGCTCCTCAATACTCAGGAGTAATGGACTGTATCAAAAAGGTTTTTCGAAAGGAAGGTGTCCCAGGTTTTTATAGAGGTTGTGCGACGAATCTGTTGCGAACAACTCCATCTGCTGTAATAACTTTCACCAGCTATGAAATGATACATAGGTTCCTACTGCGAGTTATACCTTCTGGTGAGGATAAATATTCAGAAACCCATCCGAACTCCAATAGCAATAGTCATGTGAAGGCCCAAAAGGCGAACATAGACGATGCAAACGAAGTTAGAGATTCCGACATACAACAATCACAATCCCAACCAAGTAAGCAAACTAGTTTTCCTCTGGGGAATAAAGAACGCTTAACATCTAGACATTGA 1116 45.61 MSGGAGGTSRSTRDLICNAGAGAAAGSIAATFVCPLDVIKTRLQVHGLPSGQSGGSIIITSLQSIMRSEGFRGMYRGLSPTIVALLPNWAVYFTVYEHLKGLLHSDGDDGHQLSFGANMLAAAGAGASTAIATNPLWVVKTRLQTQGMRPGVVPYTGMVSAFTRIVREEGIRGLYSGIIPSLVGISHVAIQFPAYERLKSYIAKRENTTVDKLSPGHLAIASSLSKVTASVMTYPHEVVRSRLQEQGQARNIAPQYSGVMDCIKKVFRKEGVPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLLRVIPSGEDKYSETHPNSNSNSHVKAQKANIDDANEVRDSDIQQSQSQPSKQTSFPLGNKERLTSRH* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23954438 23958618 - CsaV3_5G028840.1 Csa05g02065 530452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02065 371 MobiDBLite consensus disorder prediction 344 364 - -
Csa05g02065 371 Pfam Mitochondrial carrier protein 214 305 IPR018108 -
Csa05g02065 371 Pfam Mitochondrial carrier protein 112 205 IPR018108 -
Csa05g02065 371 Pfam Mitochondrial carrier protein 18 105 IPR018108 -
Csa05g02065 371 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 10 313 IPR044712 GO:0006862|GO:0055085
Csa05g02065 371 MobiDBLite consensus disorder prediction 315 332 - -
Csa05g02065 371 Gene3D Mitochondrial carrier domain 110 308 IPR023395 -
Csa05g02065 371 Gene3D Mitochondrial carrier domain 5 109 IPR023395 -
Csa05g02065 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 303 IPR018108 -
Csa05g02065 371 MobiDBLite consensus disorder prediction 313 371 - -
Csa05g02065 371 PRINTS Mitochondrial carrier protein signature 18 31 IPR002067 GO:0055085
Csa05g02065 371 PRINTS Mitochondrial carrier protein signature 31 45 IPR002067 GO:0055085
Csa05g02065 371 PRINTS Mitochondrial carrier protein signature 77 97 IPR002067 GO:0055085
Csa05g02065 371 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085
Csa05g02065 371 PRINTS Mitochondrial carrier protein signature 175 193 IPR002067 GO:0055085
Csa05g02065 371 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085
Csa05g02065 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
Csa05g02065 371 SUPERFAMILY Mitochondrial carrier 14 299 IPR023395 -
Csa05g02065 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 102 IPR018108 -
Csa05g02065 371 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 10 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02065 Csa-Chr5:23954438 Csa07g01874 Csa-Chr7:18744187 1.89E-136 dispersed
Csa05g02065 Csa-Chr5:23954438 Csa02g02378 Csa-Chr2:21122110 2.40E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02065 K15115 - csv:101216902 691.034