Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02066 ATGAAGAGTCAATTTCAGAGCCCGAAGCTAATCCATATCCATCTCACCTTCTTCCACGTCGTCCCTTACATCCTCCTCTTCACCGTCGGAATCACCGCCGGAGTTTTCCTCACTTTCTATCTCTCCAATTTCTTCATTAGCTTAAACCTCACCCAGATCTCCTCTTCGGATTTCTTCCCTGTAACCGGCGGCCGAGTGGGTTTGGAAGAGTTTTTGAAGCCGCCTGAAGTAATGCACGACATGGATGATGAGGAGCTTCTCTGGAGAGCTTCAATGATGGCCAGAATCAAGAAATTTCCGTTCCAGCGGGTCCCGAAGATCGCGTTCATGTTTTTAACAAAAGGGCCGGTGTATTTAGCTCCACTTTGGGAAGAATTCTTTAAAGGGAATGAAGGACTTTACTCTGTTTATGTTCATTCTGATCCTTCTTATAATCATTCTTCTCCTGAGCCCCCTGCTTTCCATGGCCGAAGAATCCCCAGCAAGAAAGTTGGATGGGGAAAAGTAAACATGATCGAAGCAGAACGACGGCTAATTTCAAACGCACTCCTTGATATTTCAAACGAGCGATTTGTTCTTCTCTCCGAATCATGTATTCCTCTGTTTAACTTCTCCACAGTCTACTCTTTTCTCATAAATTCCACCATGAAAAGCTTCATCATGAGCTACGACGAACCCAGCAACGTCGGCCGTGGTCGATACCGGAACAAAATGTTCCCACCCATCTCTCTAAAACAATGGCGAAAAGGCTCGCAGTGGTTCGAGATTGACCGAGACACCGCCGTGGCTGTCGTCTCGGATAAGAAGTACTTCCCTGTTTTCCAGAATTACTGTAAAGGGCAATGTTATTCAGACGAACATTATTTGCCAACGTTGGTTAACGTTTTGGGGTGGGATCGGAATGGTAATCGGAGTTTGACCTGGGTTGACTGGTCAAAGGGCGGGCCACATCCGGCGAGATACTCGCGGTCGGATATCCACGTGGAGCTAATTCAGAGATTGAGGAATCAAACCGGAGAGTGTAGGAAAAGTAAAATGGAAGGGAAAGGTGTCTGCTTCTTATTCGCTAGAAAGTTTGCTCCAAATGCTTTGGAGAGACTTGTGAACATTGCACCAAAGGCCATGTACTTTGGGAGATAG 1140 46.32 MKSQFQSPKLIHIHLTFFHVVPYILLFTVGITAGVFLTFYLSNFFISLNLTQISSSDFFPVTGGRVGLEEFLKPPEVMHDMDDEELLWRASMMARIKKFPFQRVPKIAFMFLTKGPVYLAPLWEEFFKGNEGLYSVYVHSDPSYNHSSPEPPAFHGRRIPSKKVGWGKVNMIEAERRLISNALLDISNERFVLLSESCIPLFNFSTVYSFLINSTMKSFIMSYDEPSNVGRGRYRNKMFPPISLKQWRKGSQWFEIDRDTAVAVVSDKKYFPVFQNYCKGQCYSDEHYLPTLVNVLGWDRNGNRSLTWVDWSKGGPHPARYSRSDIHVELIQRLRNQTGECRKSKMEGKGVCFLFARKFAPNALERLVNIAPKAMYFGR* 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23963010 23964553 - CsaV3_5G028850.1 Csa05g02066 530453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02066 379 Pfam Core-2/I-Branching enzyme 107 334 IPR003406 GO:0016020|GO:0016757
Csa05g02066 379 PANTHER CORE-2/I-BRANCHING ENZYME 9 376 - -
Csa05g02066 379 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 9 376 IPR044174 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02066 - - - csv:101202787 786.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00397 Csa-Chr1:2479842 Csa05g02066 Csa-Chr5:23963010 1.78E-132 dispersed
Csa01g00673 Csa-Chr1:4322051 Csa05g02066 Csa-Chr5:23963010 8.60E-112 dispersed
Csa03g02020 Csa-Chr3:16188848 Csa05g02066 Csa-Chr5:23963010 7.19E-121 dispersed
Csa04g02519 Csa-Chr4:25004583 Csa05g02066 Csa-Chr5:23963010 9.15E-117 dispersed
Csa05g02066 Csa-Chr5:23963010 Csa07g02408 Csa-Chr7:22121204 1.07E-112 dispersed
Csa05g02066 Csa-Chr5:23963010 Csa01g00672 Csa-Chr1:4318571 7.23E-131 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g340 Blo01g00733 . Bda01g01847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0449 . Csa05g02066 . . . . . . . Bpe02g02024 . . . . Cmo15g00962 . Cma15g00923 . Car15g00865 Cpe13g00397 . Bhi12g00834 . . . . . Lcy10g1475 Cla01g00570 Cam01g0596 Cec01g0585 Cco01g0611 Clacu01g0589 Cmu01g0561 Cre09g1946 Lsi09g00618 . Chy09g00894 Cme09g01427
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002751 1 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 2 2 2 3 57