Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02073 ATGTTCACGCCTCAGAGGACGGGGTGGCCTGCTGCATCCCTCACGCCTCGAACCGAACCAAAACTTGCACTTACCAATTCCATTATTCTTGGGAAGGGCAAGGACGTGACTTTTACAGACGACCCACCTCCGCCGTTGGGATCTCTTAACGACGAATTGTATAAAACCGCGACGGCGGTGGATACTGGGGACATGGATGATTGGAGGAAGTTTAAGAAAGCCGGGTTGTTGGACGCGGCTGCAATGGAGCGTAAGGATCGGGAAGCGCTTCTCGAGAAGGCTTCAAGGCTTCAAAGCGAGCTTCTTGATTATCAGCACAATTTGGGACTTCTTTTGATAGAGAAGAAAGATTGGGCTTCAAAGTTTGACGAACTAGGGCAAGATTTAGCAGAAACTGAGGAGATCTTCAAGCGTGAACAATCAGCACATTTAATTGCATTATCTGAGGTTGAAACGAGGAGGGATAATTTGAAGAAAGCCCTAGCTGCTGAGAAGCAGCATGTTTCTAGTCTTAAAATGGCTTTTTATGAAGTAAATGAGGAGCGTGCTGAAATAAAGCTTACATCTCAGAAGAAGTTGGCTGATGCAAATGCTTTGATGCATGGAATTGAGGAGAAATCTTTGGAGTTGCAGAAAAAGTTGAATGCTGCTGAAGCCAAGCTTGCTGAGGTAAATAGGAAAAGTTCAGAGTTGGAGATGCGAATGCATGAAGTTGAAGCTCGTGAAAGTGTGCTTCAAACTGAGCAGATATCCTTAGTCACGGGGAAAGAAGCACATGAGGCAACCTCCCATAAAGAAAGAGAAAGTTTACGTAAGTGGCAGCAGAAGTTGCAGGAAAGAGAAGAAAAACTGAGCAAGAGTCGTGAATTGCTTAATGATAAAGAGCAGAAGGTAAGTGAAAATAGCACAACTATGAAGCAGAAAGAGAAGGATCTTGAAGAGATGAAGAAGAAGATCGATCTGTCAAGTTCAGTCCAGAAAGGGAAGGAAGATAATGTAAATAGACGATTAGCAGATGTAGAAGCAAAAGAGAAGGAAGCTGATTTTTCAAGAAGTCTCTTAGAGAAAAAACAAGAAGAATTACGTCAGATGGAAGAAAACCTTCATGGGAGAGAAATGATGGAGATCCAACAGCTGCTTGACGAGCAAAGAGTAATTCTACAGAAGAAGAAAGAACAGTTTGAGTTACAATTGGAAGAAAAGAGGCAGTCTCTGGATAATGAAGGTAGTACAGTGCTAGGAGCACTCAAAAGGAAGGATCTTGAAATTAATCATGAGAAAGAAAAGTTGGTGAAGCAAGAGCAAGCTTTGGATAAAAAGTTGCTTCGAGCAAAGGAGAAAGAGGGTGATCTTGAACAAAAGATAAAAACTTTGAAATCAAAAGATAGAATTTTAAAAGCTGATGAGAAAAAGCTGGAGGTGGAAAGGTTGCAAATGCTTGCTGATAGAGAAAGCTTACGATCTCTCATTAATGAGATCGAGGAAATCAGAACTGAAAATTCTCAGAAAGAGCAGCAATTTCATGAGGAGAGGGCGAAATTGCAGGTGATGAAAGAAGAGAGATCAGAGCACGTTCGTTTAGAGTGTCAACTGATGCAGGAAATTGAGAGTTACAGACTTCAGAACAAAATAGTTATGAAAGAGCATGAGGATCTTAAGCAGGAAAGAGTCAAATTTGAGAGAGACTGGGAAGCCTTGGATGAAAAAAGGACTGAAATACATGATGAACTTAGTGATCTTGTGGAGGAGAGGAAAAAACTAGAGATCTTGCAAGGGGCAGAGGAGGGAAGGTTGAGAAATGAGAAAAATGAAATGCTAATTTATATGCAGAGAGAGTTGGAGAATGTCAAACAAGAAAAAGAATTATTTGCCTCAACTACAAGGCAAGAGCAGCAAGCCTTGTCTGAGCAGGCTCAAACCAAGCATAGCCAACTACTGCAAGATATAGAATTTCAGAGAAAAGATCTTGAAAGTCACTTGCAGAATAGCCAGATGGAACTAGAGAAAGAACGGCAGGAAAGGGAGCTAGCATTTGAAGAGGAGAGAGAGAGAGAACGAAACAAATTGTTTTGCTTGAGAGACATTGCTCAGAAAGAAACAGACGATTTATTATCTGAAAGGCATCAATTGGAAAAGGAAAAGGAGGTGGTTTCCCTGAATAGGAAGCAAATGATAGCAGACCATCTTGAAATTCATCAAGATATTGATAAGCTCAACATATTAAGTAAGGAGCTTAAAATTCAGAGGGAACAACTTATTCGGGATAGGGTTTGCTTTTTGACCTTTGTTGATAAGCATAAGAGTTGTGGTAAGTGTGGTGTGTCCATTGAAGAATTTGTAGTTCCTGACCTCCAAATTCCTGAAGAAATCAGAAAATCGCACCCTCTACCAAAGTTAGATGCCAATTCTCTACAAACCCTCCAAAGAGAATTTGCTGCTTCAGAGTTTGATTCTTCAGATTCTGGAGGTCGCATGTCTTGGCTCAGAAGATGCAGCAGAAAGATTCTAAAACTATCTCCTATTAAGAAAATTGGACATGTAGTTCCTTCTGTTCCCATGAAGTTGGCTGCAGATTGTACTGATTTAGAAGTCAAGGAGCCTAGAGTTAATGTTGGCGATGTGAAAAGGTCTGGTATTGCTGATGAACCTCAACAATCTTCTTTTATTGAGAGTGAACCATCTGGTGTTCAAAGATTTTCGTTCAGTGATAACATCAGACTGGCGGAAAATAGACATGAACATACATTAGATGATTTTAACAACTTAGACAGCAAGTTTGAAGAAGCCTCAGAAGCTTCAAAACAACCTGACATGAAGAAAGAGAGGCCAAAACATGCGAAAGGACTCAAGTCTGGTCATAGAACACGTTCAGTGAAGGCAACTGTTCAAGATGCAAAAGCTTTTCTTGGGGAAACTGGAGGACAGTCGGATCTTAATGTACCTGTACAGAGTGATTCAAATTCTTTATACAAAGAAACTAGCAACATTCGGAAGCGGCCACTGCCGGAAGATGAGCAAGATGATGACAGTGAAGGATGTTCTGATAGCATCACAACTGTCAGGCAACGTAAAAGACAACAAAAGATTCTCCCTGTGCAAACGCAAGGAGAAAGCCGATATCATCTGAGGCGACACAAGAATCCTGGCAAAGCTAGTGCAGTTCAGGTTTCACCAAACCTGACAACGGTGATGGAGAAAGAAAACGAAGAAACCCTTGCTGTAGGTGGTGAAAATGGGGAAAAAATGGACTCTGTGAAGATTACAACAGTCAGAACCATCTATCATTCCGAGGACAGAGTAGTTCGGTTTGAATCACAAAGAACAGCTGAAGATAATGCTCCCACGGAGAAGTTGGTTACAACAGTCAATGATTTGTGCGATGAAGTGAATGGTTCATCAGAATACGAGGATGAAGATCAAAGCATACTTGACGATGAAGATGAGTATGACGAAGAGCAGCCCGATGTGGGATCAATTGGAAAGAAGATTTGGACATTTTTCACAACTTAG 3510 41.2 MFTPQRTGWPAASLTPRTEPKLALTNSIILGKGKDVTFTDDPPPPLGSLNDELYKTATAVDTGDMDDWRKFKKAGLLDAAAMERKDREALLEKASRLQSELLDYQHNLGLLLIEKKDWASKFDELGQDLAETEEIFKREQSAHLIALSEVETRRDNLKKALAAEKQHVSSLKMAFYEVNEERAEIKLTSQKKLADANALMHGIEEKSLELQKKLNAAEAKLAEVNRKSSELEMRMHEVEARESVLQTEQISLVTGKEAHEATSHKERESLRKWQQKLQEREEKLSKSRELLNDKEQKVSENSTTMKQKEKDLEEMKKKIDLSSSVQKGKEDNVNRRLADVEAKEKEADFSRSLLEKKQEELRQMEENLHGREMMEIQQLLDEQRVILQKKKEQFELQLEEKRQSLDNEGSTVLGALKRKDLEINHEKEKLVKQEQALDKKLLRAKEKEGDLEQKIKTLKSKDRILKADEKKLEVERLQMLADRESLRSLINEIEEIRTENSQKEQQFHEERAKLQVMKEERSEHVRLECQLMQEIESYRLQNKIVMKEHEDLKQERVKFERDWEALDEKRTEIHDELSDLVEERKKLEILQGAEEGRLRNEKNEMLIYMQRELENVKQEKELFASTTRQEQQALSEQAQTKHSQLLQDIEFQRKDLESHLQNSQMELEKERQERELAFEEERERERNKLFCLRDIAQKETDDLLSERHQLEKEKEVVSLNRKQMIADHLEIHQDIDKLNILSKELKIQREQLIRDRVCFLTFVDKHKSCGKCGVSIEEFVVPDLQIPEEIRKSHPLPKLDANSLQTLQREFAASEFDSSDSGGRMSWLRRCSRKILKLSPIKKIGHVVPSVPMKLAADCTDLEVKEPRVNVGDVKRSGIADEPQQSSFIESEPSGVQRFSFSDNIRLAENRHEHTLDDFNNLDSKFEEASEASKQPDMKKERPKHAKGLKSGHRTRSVKATVQDAKAFLGETGGQSDLNVPVQSDSNSLYKETSNIRKRPLPEDEQDDDSEGCSDSITTVRQRKRQQKILPVQTQGESRYHLRRHKNPGKASAVQVSPNLTTVMEKENEETLAVGGENGEKMDSVKITTVRTIYHSEDRVVRFESQRTAEDNAPTEKLVTTVNDLCDEVNGSSEYEDEDQSILDDEDEYDEEQPDVGSIGKKIWTFFTT* 1170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24052295 24064463 - CsaV3_5G028920.1 Csa05g02073 530460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02073 1169 Coils Coil 486 520 - -
Csa05g02073 1169 Coils Coil 200 241 - -
Csa05g02073 1169 MobiDBLite consensus disorder prediction 976 994 - -
Csa05g02073 1169 PANTHER PROTEIN CROWDED NUCLEI 4 1 1169 IPR040418 GO:0005634|GO:0006997
Csa05g02073 1169 Coils Coil 80 107 - -
Csa05g02073 1169 MobiDBLite consensus disorder prediction 278 312 - -
Csa05g02073 1169 MobiDBLite consensus disorder prediction 1013 1034 - -
Csa05g02073 1169 Coils Coil 693 713 - -
Csa05g02073 1169 PANTHER PROTEIN CROWDED NUCLEI 3 1 1169 - -
Csa05g02073 1169 MobiDBLite consensus disorder prediction 1129 1155 - -
Csa05g02073 1169 Coils Coil 646 684 - -
Csa05g02073 1169 Coils Coil 263 325 - -
Csa05g02073 1169 Coils Coil 535 569 - -
Csa05g02073 1169 Coils Coil 147 167 - -
Csa05g02073 1169 MobiDBLite consensus disorder prediction 971 1054 - -
Csa05g02073 1169 Coils Coil 340 404 - -
Csa05g02073 1169 MobiDBLite consensus disorder prediction 926 944 - -
Csa05g02073 1169 Coils Coil 735 755 - -
Csa05g02073 1169 MobiDBLite consensus disorder prediction 1130 1153 - -
Csa05g02073 1169 Coils Coil 599 619 - -
Csa05g02073 1169 MobiDBLite consensus disorder prediction 926 958 - -
Csa05g02073 1169 Coils Coil 416 461 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02073 - - - csv:101222820 2218.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02073 Csa-Chr5:24052295 Csa05g03087 Csa-Chr5:30875086 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0864 Cone19ag0864 . . . Csa05g02073 . . . Blo11g00826 Bda07g01523 . Bpe11g01685 . . . . Cmo04g02051 . . . Car04g01940 . . . Bhi12g00824 . . . . . Lcy10g0868 Cla01g00563 Cam01g0586 Cec01g0578 Cco01g0602 Clacu01g0581 Cmu01g0552 Cre09g1955 Lsi09g00612 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004989 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 3 4 1 1 1 1 1 39