Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02076 ATGAACAGAATAAGTGTTGTTGTTGCTGTTTCAATTGCAGCTTATGCAATTAAGCAGCTCACAATCAGATCATGGACCTCATTTTTCTTGCCTACCACCAACTGTTCAGAAAATGGAGAGGACGTGAAGAAGAATGTAAAGCAAGTACACCAAAAAATTATTCGTGGATTGGAGGAAGAAGAAGAAGAGGAAGCTAATTCAATAAGTGATACAACTAGTCAAGTTAATGGTAGAACCTCTGATCTTGAAGATGGAGATCATAGTTCAGATGAGTTTCAAGTACTTCTATTACCACAACGAAATTCCGAAAATTGGTTGCTTGATGACAATAGGAAAGAAGAAAAAGTGCCTGAATTCCTTATAGAAAACAGTAAGATTGAATTGGAAAGGTTGCTGAAATTATTGATGGAATTGGAGGAGAGGAAAGTGAAACTTGAAGGTGAATTGATCATGTGCGACGGAATAAAATACAGTGAAACCGACGTCATGGAGTTACGAAAGCAGCTGGACGCCAAGAATGATGATATCAGTATGCTTAATAACACAATCAGCTCTTTGCAAGCTGAGAGAAAGATTCTAAAAGAAGAGATATTGAAGGGAGCATTGATGAAGAAGGAACTAGAGGAGGGTAGGGGCAAGATTAAGGAGCTGCAGAGGCAAATTCAGCTTGATGCAAACCAAACAAAAGAACGTTTATTATTACTCAAACAACGAGTTTCCACTTTGCAGGCAAAAGAGGAAGAGGCTGTCAAGAAAGAAGCAGAACTTTATAAGAAACAGAAAGCGGCTAAGGATTTCGAGGTAGAATTTGGGGAGCTTAAGTGGAAGAATCGAGAGCTTCAACACGAAAATCAGGAACTAACTTCTAAACTAGAAGTTATGAAGGCCAGAATCAAAACACTGACTAAGATGACAGAGACTGAAATAATCACCAAAGAAAGAGAAGAGGCTCAAAAGTTAAAGAGTGAAAATGAGGATCTCATAAAGCAACTTGAAGGGCTCCAGATGAATAGGTTTAGTGAAGTTGAAGAGTTAGTGTACCTTCGTTGGATCAATGCTTGCTTGAGGTATGAGCTTCGAAACAACCAGATACCGGCAGGTGAATCCGCTCGTTATCTCAATAAGAGTTCAAGTCCAAAGTCAAAAGAAAAGGCAAAACAACTCATGTTAGAGTATGCAGGAAAGGAGATTGGAGAAGCAGAAACAGATCATGAAAGCAACTTTTCTCATCCATTCTCTTCTGAGATCGATAATCTTGAAAACACTTCAATTGATAGTTCAAGAAGCAGAACAAGTAGTTTCAGAGAGAAGCCTAATTCAAATTTGAGTTTGAAGAAATTGATCAGAAACCAAGGTGGTTCGAGTGCTGTTTCGCCTCCCAGCACAATCGATTCGAGCCACAGATGGAAGGATCCTTTAGAAGCAGTGATGGCTCTGAGTGCTGAAACTTTAACTCTCTCAGAGGTTAGATTGCAAGTTTCTTCAAGAAAATCTGTCAACTCAGTTGCAACATCATTCCAACTGATGTCTAAATCAGTTGAACAAAGTCTACAACAGAAATATTCAACTTATAAAGAGCATCATAAGTTGGCCATAGGGAGTGAGAAGCAAATCAAGGAAAAGGTTGAGAACGAAAGGGCAAAAAGTTCTGGCGACTCTTCAAGTTCGAATTTAGAATACGAAGACATTAGCATGAGAAAGAATGCAACTTTAGTCCTTAAACTTGCCCAAATGAAGATGAATAAAATTTCTTGTGAACCAGATAGCCAATATGATAATAATAGCACAAATTTTATATCCAGTCCAACTTCTTCTGGAGGTGAAGTTCATCGAGGATCCGAGTTAGTTCAATTCAATCGAAAAATGATGAAACCTGAGGTGAAAGATCATATGGAAACTCAAAGAGATCACTTGGTTATGGCATTGGCAATGGAAGTTAGAGAAGCGTCTTTCTCCAACATGGAAGATATCGTCTCCTTCGTTATATGGCTAGACGAAAAGTTATCTTCTTTGGTTGATGGGATGGAGATTCTCGAACATTTCGATTGGCCTAAGCGAAAAACAGATGCTTTAAGAGAAGCAGCCTTTGGATATCAGAAGCTGATGAAACTAAGAGAAGAAGTTTCTTCTTTTGTTGACAATCCCAAACTCACATGTGAAGTTGCTTTAAACAAAATGAACTCCTTGCTAGATAAGGTGGAGCAGAGTGTGTATGCATTGTTACAAACAAGGGACACGACGATTTCGCGATACGAGGAACTCGGAATTCCCATTGATTGGTTGTTGGATTGTGGAGTTGTTGGGAAGATAAAGGTGTTATGTGTAGAATTGGCAAGGAAGTACATGAAACGCATAGTAAAAGAACACAATGCATTGAGTGGACCTGAAAAAGAACCAAATAGAGAATTTTTGCTTTTCCAAGGAGTGCGTTTTGCTTCTCGCGTTCATAAGGAGGCTTTGATTCGAAGAGCATGA 2475 38.87 MNRISVVVAVSIAAYAIKQLTIRSWTSFFLPTTNCSENGEDVKKNVKQVHQKIIRGLEEEEEEEANSISDTTSQVNGRTSDLEDGDHSSDEFQVLLLPQRNSENWLLDDNRKEEKVPEFLIENSKIELERLLKLLMELEERKVKLEGELIMCDGIKYSETDVMELRKQLDAKNDDISMLNNTISSLQAERKILKEEILKGALMKKELEEGRGKIKELQRQIQLDANQTKERLLLLKQRVSTLQAKEEEAVKKEAELYKKQKAAKDFEVEFGELKWKNRELQHENQELTSKLEVMKARIKTLTKMTETEIITKEREEAQKLKSENEDLIKQLEGLQMNRFSEVEELVYLRWINACLRYELRNNQIPAGESARYLNKSSSPKSKEKAKQLMLEYAGKEIGEAETDHESNFSHPFSSEIDNLENTSIDSSRSRTSSFREKPNSNLSLKKLIRNQGGSSAVSPPSTIDSSHRWKDPLEAVMALSAETLTLSEVRLQVSSRKSVNSVATSFQLMSKSVEQSLQQKYSTYKEHHKLAIGSEKQIKEKVENERAKSSGDSSSSNLEYEDISMRKNATLVLKLAQMKMNKISCEPDSQYDNNSTNFISSPTSSGGEVHRGSELVQFNRKMMKPEVKDHMETQRDHLVMALAMEVREASFSNMEDIVSFVIWLDEKLSSLVDGMEILEHFDWPKRKTDALREAAFGYQKLMKLREEVSSFVDNPKLTCEVALNKMNSLLDKVEQSVYALLQTRDTTISRYEELGIPIDWLLDCGVVGKIKVLCVELARKYMKRIVKEHNALSGPEKEPNREFLLFQGVRFASRVHKEALIRRA* 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24079865 24085061 + CsaV3_5G028950.1 Csa05g02076 530463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02076 824 Coils Coil 200 262 - -
Csa05g02076 824 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 2 583 IPR040265 -
Csa05g02076 824 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 595 817 IPR040265 -
Csa05g02076 824 Coils Coil 162 196 - -
Csa05g02076 824 Coils Coil 121 148 - -
Csa05g02076 824 Coils Coil 310 337 - -
Csa05g02076 824 MobiDBLite consensus disorder prediction 535 559 - -
Csa05g02076 824 MobiDBLite consensus disorder prediction 400 443 - -
Csa05g02076 824 Coils Coil 270 304 - -
Csa05g02076 824 MobiDBLite consensus disorder prediction 411 443 - -
Csa05g02076 824 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 2 583 - -
Csa05g02076 824 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 595 817 - -
Csa05g02076 824 MobiDBLite consensus disorder prediction 59 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02076 - - - csv:101222579 1514.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02076 Csa-Chr5:24079865 Csa06g03878 Csa-Chr6:30672678 8.78E-22 dispersed
Csa05g02076 Csa-Chr5:24079865 Csa05g02572 Csa-Chr5:27063723 1.65E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g251 . Blo16g01047 . Bda11g00222 Bpe13g01324 . . . Cmo04g01612 Cmo18g01069 . Cma18g01050 Car04g01590 Car18g00975 Sed06g1858 Cpe09g00269 Cpe01g01369 Bhi07g01378 Tan04g0905 Cmetu10g1207 Lac13g0451 Hepe10g1864 . . . . . . . . . Cone13ag0861 Cone19ag0861 . . . Csa05g02076 Chy10g01109 Cme10g00298 . . . Bda11g00222 . . . Bma06g00775 . . . . Cma15g01418 . Car15g01280 Cpe13g00031 . Bhi12g00819 . . . . . Lcy10g0877 Cla01g00560 Cam01g0583 Cec01g0575 Cco01g0599 Clacu01g0578 Cmu01g0549 Cre09g1958 Lsi09g00609 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012142 0 6 0 0 0 1 0 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 2 0 1 1 1 3 3 0 30