Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g02081 | ATGTCTCGGAAATCACAGGTGATGGTTTCACTGCAGTCCATCAAATCCATGCCAGTTAATTCTCGGTTTATGATTCCCCAATCTGCTGAAAATTTGGAAGATCCTTACAGTCGGAATGTGAAAAACATGGAAGCTAATTCGATAGTTGATGGTGAAAATGGTGCTGTGGGAGATGATGCCGTCAATCGACATCAATACGGTACGAACGGTATTGATGAGCTGAATGAGGACTCACCATATAATTGTAATACTACATCAGTGGAAGAAAGACCCACCATGGATGATGGAGAAGATGGTTTTATGCCTTTACCTTCACCTTCAGTATCGGCTTCACATAGTGAACGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATACTTCAGTCTTGGTTTAAACTTCCAAATGGGAATTGGGATCTTGTAAAGATACTATCAACGACAGGAACAGAGTCAGTAGTTTCACTGACTGATGGAAAGGTGTTAAAGGTGAAAGCTGAAAATTTGATTCCAGCAAATCCGGATATTCTTGATGGCGTCGATGATCTTATGCAACTTAGCTATTTAAATGAGCCTTCAGTATTATACGATCTTGAGTACAGATATAATCAAGATGTTATATATACAAAAGCAGGGCCAGTTCTGGTTGCCATCAATCCTTTTAAGAAAGTCGATTTGTATGGAAACGATTACATTGATGCATACAAGCGCAAAACAGTTGAGAGCCCACACGTATATGCCATTACCGATACAGCCATAAGAGAGATGATTCGAGATGAAGTAAATCAATCAATTATAATAAGTGGTGAAAGTGGAGCTGGGAAAACTGAAACAGCAAAGATAGCAATGCAATATTTGGCTACTCTTGGTGGTGGAAGTGGAATAGAATATGAGATATTAAAGACCAATCCTATCCTAGAAGCTTTTGGGAATGCAAAAACATTGAGAAATGATAACTCAAGCCGTTTCGGAAAGTTGATAGAAATCCATTTTAGTGAAACTGGGAAAATATCTGGTGCAAATATTCAAACTTTTTTGCTTGAAAAGTCTAGAGTTGTCCAATGCACGGAAGGAGAAAGGTCATATCACATCTTTTATCAACTTTGCAGTGGGGCTTCACCTGCACTCAAAGAGAAGTTAAACTTGAGAAGAGCAGAAGAGTACAAATATCTCTGCCAAAGCAGTTGTTTTTCAATAAGTAGAGTAAATGATGCTGAGGAGTTTCGTGTAGTCATGGAAGCACTGGATGTTGTCCATATCAGCAAAGAAGACCAGAACAGTGTATTTGCAATGCTTGCTGCTGTTCTTTGGCTTGGAAATGTTTCCTTTAGTGTTATAGACAATGAGAATCATGTGGAGCCAGTGGAAGATGAAGGTTTACAGACTGTTGCTAAGCTGATTGAGTGTGAGATTGAGGAGCTTAAACTAGCATTATCAACTCGAAAAATGAGAGTTGGGAATGACAGCATTGTCCAAAAGCTTACCTTATCTCAGGCAATTGACACTAGAGATGCTTTGGCAAAGTCAATCTACGCTTGTTTGTTTGAGTGGCTGGTTGAACAAATTAACAAATCTCTTGCTGTAGGCAAACGACGCACTGGCAGATCCATAAGCATTCTTGATATCTATGGCTTTGAATCATTTGATAGGAATAGTTTTGAACAGTTCTGTATTAACTATGCAAATGAGAGACTACAGCAGCATTTCAATCGTCATTTATTTAAGCTAGAGCAGGAGGAATATATTCAAGATGGCATCGATTGGGCAAAAGTTGATTTTGACGACAATCAAGATTGTCTGAGTCTGTTTGAAAAGAAACCTTTGGGATTGTTGTCCCTGTTAGACGAGGAGTCTACTTTTCCAAATGGCACAGATCTGACCTTCGCGAACAAGCTAAAGCAGCATTTGGGTCCTAATTCATCGTTTAGAGGAGAACGAGGGAAAGCCTTCACTGTCTGTCATTATGCAGGAGAGGTCACTTACGACACAACTGGTTTTCTGGAGAAAAACAGGGACTTGCTACATTTAGATTCTATTCAACTCCTATCCTCATGCTCATGTCATCTCCCTCAGATTTTTGCATCCAACATGTTAACTCAGTCGGAAAAGTCCATAGGTGGCACTTTACACAAGTCTGGTGGTGCAGAATCCCAAAAATTAAGTGTTGCAAGGAAGTTCAAGGGTCAATTATTCCAATTGATGCTCCGTCTTGAAAATACAACACCCCATTTCATCCGTTGTATAAAGCCCAACAACGTTCAATCTCCCAGATTGTATGAGCAAGGACTTGTATTACAACAGTTAAGATGTTGTGGGGTCCTAGAAGTGGTACGAATATCACGAGCTGGTTTTCCTACCCGGATGTCACATCAGAAATTTGCTAGAAGGTATGGTTTCCTTCTACAAGAAAGCATTGCATCACAGGATCCCCTTGGTGTCTCAGTCGCAATTCTTCATCATTTCAATATATTGCCTGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACTGGGCAGATTGGAGTTCTTGAAGATACAAGGAACCGCACGCTTCATGGTATTCTCTCTGTTCAAAGCTGTTACAGAGGGCACCTGGCTCGACGCCACCTTAAAGAGCTAAAGAGAGGGATTTCTGTACTTCAGTCATTTGCGCGTGGGGAGAAAGCAAGAAAAGAATATTCAATCTTGATACAAAGGCATAGGGCTGCTATTTCCATTCAAAAGAGTGTGAAAGCCAGAATTGCTAGTAAACGTTTGAAGAATGTCTGTGATGCATCACTTACGATACAATCAGTTATCCGTGGCTGGTTGGTTAGGAGATGCTCAGGAGATATTGGATTAATGAAACCTGGTGGCCTGACGGCAAATGGGTCAGGTGAAGTGCTTGTTAAGTCATCATTCCTTGCAGAATTACAACGCCGTGTCCTGAAAGCAGAGGCTGCTTTGAGAGAGAAAGAAGAGGAAAATGACATCCTCCATCAGCGCCTCCAACAGTATGAGAACCGTTGGTCAGAGTATGAGCTGAAAATGAAGTCAATGGAAGAGGTATGGCAGAGACAAATGAGATCCCTGCAATCTAGCCTCTCCATTGCAAAGAAAAGCTTAGCAGTTGATGATTCAGAGAGAAATTCTGATGCATCAGTAAATGCAAGTGATGACAGAGGATACAGTTGGGAAGTGGGTAGCAACAACACAGCTAATGAAAGCAATGGAGTAAGACCAATGAATGCAGGTCTCAGCGTCATTAGCCGATTGGCTGAAGAATTCGAACAAAGAAGTCAAGTCTTTGGCGATGACGCAAAGTTCTTAGTAGAGGTAAAATCCGGTCAAGTTGAGGCAAGTCTTGACCCAGATAGAGAACTAAGAAGGTTGAAACAAATGTTTGAAGCATGGAAGAAAGATTACGGGGGAAGGCTGCGTGAAACGAAAGTGATTTTGACTAAGCTTGGGAATGAAGGTGCCATGGATAGAGTGAAAAAGAAATGGTGGGGAAGGAGGAACAGCACAAGGTATAGTTAA | 3528 | 41.13 | MSRKSQVMVSLQSIKSMPVNSRFMIPQSAENLEDPYSRNVKNMEANSIVDGENGAVGDDAVNRHQYGTNGIDELNEDSPYNCNTTSVEERPTMDDGEDGFMPLPSPSVSASHSERRWGDTSSYTPRKILQSWFKLPNGNWDLVKILSTTGTESVVSLTDGKVLKVKAENLIPANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDVIYTKAGPVLVAINPFKKVDLYGNDYIDAYKRKTVESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLATLGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCTEGERSYHIFYQLCSGASPALKEKLNLRRAEEYKYLCQSSCFSISRVNDAEEFRVVMEALDVVHISKEDQNSVFAMLAAVLWLGNVSFSVIDNENHVEPVEDEGLQTVAKLIECEIEELKLALSTRKMRVGNDSIVQKLTLSQAIDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLGPNSSFRGERGKAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLTQSEKSIGGTLHKSGGAESQKLSVARKFKGQLFQLMLRLENTTPHFIRCIKPNNVQSPRLYEQGLVLQQLRCCGVLEVVRISRAGFPTRMSHQKFARRYGFLLQESIASQDPLGVSVAILHHFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILSVQSCYRGHLARRHLKELKRGISVLQSFARGEKARKEYSILIQRHRAAISIQKSVKARIASKRLKNVCDASLTIQSVIRGWLVRRCSGDIGLMKPGGLTANGSGEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQRQMRSLQSSLSIAKKSLAVDDSERNSDASVNASDDRGYSWEVGSNNTANESNGVRPMNAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEAWKKDYGGRLRETKVILTKLGNEGAMDRVKKKWWGRRNSTRYS* | 1176 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 24121425 | 24135983 | + | CsaV3_5G029000.1 | Csa05g02081 | 530468 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g02081 | 1175 | MobiDBLite | consensus disorder prediction | 68 | 89 | - | - | |
Csa05g02081 | 1175 | MobiDBLite | consensus disorder prediction | 68 | 94 | - | - | |
Csa05g02081 | 1175 | Coils | Coil | 971 | 1019 | - | - | |
Csa05g02081 | 1175 | Gene3D | - | 549 | 741 | - | - | |
Csa05g02081 | 1175 | SMART | MYSc_2a | 173 | 852 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Csa05g02081 | 1175 | Gene3D | - | 361 | 417 | - | - | |
Csa05g02081 | 1175 | PANTHER | MYOSIN | 12 | 1173 | - | - | |
Csa05g02081 | 1175 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 152 | 899 | IPR027417 | - | |
Csa05g02081 | 1175 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 126 | 175 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
Csa05g02081 | 1175 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 418 | 526 | - | - | |
Csa05g02081 | 1175 | MobiDBLite | consensus disorder prediction | 1042 | 1075 | - | - | |
Csa05g02081 | 1175 | ProSiteProfiles | IQ motif profile. | 855 | 881 | IPR000048 | GO:0005515 | |
Csa05g02081 | 1175 | Pfam | Myosin head (motor domain) | 181 | 839 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Csa05g02081 | 1175 | Gene3D | Kinesin motor domain | 178 | 784 | IPR036961 | - | |
Csa05g02081 | 1175 | MobiDBLite | consensus disorder prediction | 1059 | 1075 | - | - | |
Csa05g02081 | 1175 | PRINTS | Myosin heavy chain signature | 209 | 228 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Csa05g02081 | 1175 | PRINTS | Myosin heavy chain signature | 263 | 288 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Csa05g02081 | 1175 | PRINTS | Myosin heavy chain signature | 305 | 332 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Csa05g02081 | 1175 | PRINTS | Myosin heavy chain signature | 537 | 565 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Csa05g02081 | 1175 | PRINTS | Myosin heavy chain signature | 590 | 618 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Csa05g02081 | 1175 | SMART | iq_5 | 852 | 874 | IPR000048 | GO:0005515 | |
Csa05g02081 | 1175 | SMART | iq_5 | 875 | 897 | IPR000048 | GO:0005515 | |
Csa05g02081 | 1175 | SMART | iq_5 | 924 | 946 | IPR000048 | GO:0005515 | |
Csa05g02081 | 1175 | SMART | iq_5 | 901 | 923 | IPR000048 | GO:0005515 | |
Csa05g02081 | 1175 | CDD | MYSc_Myo8 | 193 | 839 | IPR036022 | - | |
Csa05g02081 | 1175 | Gene3D | - | 785 | 852 | - | - | |
Csa05g02081 | 1175 | PANTHER | P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN | 12 | 1173 | - | - | |
Csa05g02081 | 1175 | ProSiteProfiles | IQ motif profile. | 876 | 905 | IPR000048 | GO:0005515 | |
Csa05g02081 | 1175 | ProSiteProfiles | Myosin motor domain profile. | 179 | 851 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Csa05g02081 | 1175 | Gene3D | - | 904 | 945 | - | - | |
Csa05g02081 | 1175 | Gene3D | - | 857 | 903 | - | - | |
Csa05g02081 | 1175 | Pfam | IQ calmodulin-binding motif | 928 | 943 | IPR000048 | GO:0005515 | |
Csa05g02081 | 1175 | Pfam | IQ calmodulin-binding motif | 858 | 874 | IPR000048 | GO:0005515 | |
Csa05g02081 | 1175 | Pfam | IQ calmodulin-binding motif | 878 | 896 | IPR000048 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g04130 | Csa-Chr3:36200613 | Csa05g02081 | Csa-Chr5:24121425 | 0 | dispersed | |
Csa05g02081 | Csa-Chr5:24121425 | Csa06g02004 | Csa-Chr6:18024337 | 0 | dispersed | |
Csa05g02081 | Csa-Chr5:24121425 | Csa03g01150 | Csa-Chr3:9010824 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g02081 | - | K10357 | csv:101222101 | 2300.78 |