Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02081 ATGTCTCGGAAATCACAGGTGATGGTTTCACTGCAGTCCATCAAATCCATGCCAGTTAATTCTCGGTTTATGATTCCCCAATCTGCTGAAAATTTGGAAGATCCTTACAGTCGGAATGTGAAAAACATGGAAGCTAATTCGATAGTTGATGGTGAAAATGGTGCTGTGGGAGATGATGCCGTCAATCGACATCAATACGGTACGAACGGTATTGATGAGCTGAATGAGGACTCACCATATAATTGTAATACTACATCAGTGGAAGAAAGACCCACCATGGATGATGGAGAAGATGGTTTTATGCCTTTACCTTCACCTTCAGTATCGGCTTCACATAGTGAACGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATACTTCAGTCTTGGTTTAAACTTCCAAATGGGAATTGGGATCTTGTAAAGATACTATCAACGACAGGAACAGAGTCAGTAGTTTCACTGACTGATGGAAAGGTGTTAAAGGTGAAAGCTGAAAATTTGATTCCAGCAAATCCGGATATTCTTGATGGCGTCGATGATCTTATGCAACTTAGCTATTTAAATGAGCCTTCAGTATTATACGATCTTGAGTACAGATATAATCAAGATGTTATATATACAAAAGCAGGGCCAGTTCTGGTTGCCATCAATCCTTTTAAGAAAGTCGATTTGTATGGAAACGATTACATTGATGCATACAAGCGCAAAACAGTTGAGAGCCCACACGTATATGCCATTACCGATACAGCCATAAGAGAGATGATTCGAGATGAAGTAAATCAATCAATTATAATAAGTGGTGAAAGTGGAGCTGGGAAAACTGAAACAGCAAAGATAGCAATGCAATATTTGGCTACTCTTGGTGGTGGAAGTGGAATAGAATATGAGATATTAAAGACCAATCCTATCCTAGAAGCTTTTGGGAATGCAAAAACATTGAGAAATGATAACTCAAGCCGTTTCGGAAAGTTGATAGAAATCCATTTTAGTGAAACTGGGAAAATATCTGGTGCAAATATTCAAACTTTTTTGCTTGAAAAGTCTAGAGTTGTCCAATGCACGGAAGGAGAAAGGTCATATCACATCTTTTATCAACTTTGCAGTGGGGCTTCACCTGCACTCAAAGAGAAGTTAAACTTGAGAAGAGCAGAAGAGTACAAATATCTCTGCCAAAGCAGTTGTTTTTCAATAAGTAGAGTAAATGATGCTGAGGAGTTTCGTGTAGTCATGGAAGCACTGGATGTTGTCCATATCAGCAAAGAAGACCAGAACAGTGTATTTGCAATGCTTGCTGCTGTTCTTTGGCTTGGAAATGTTTCCTTTAGTGTTATAGACAATGAGAATCATGTGGAGCCAGTGGAAGATGAAGGTTTACAGACTGTTGCTAAGCTGATTGAGTGTGAGATTGAGGAGCTTAAACTAGCATTATCAACTCGAAAAATGAGAGTTGGGAATGACAGCATTGTCCAAAAGCTTACCTTATCTCAGGCAATTGACACTAGAGATGCTTTGGCAAAGTCAATCTACGCTTGTTTGTTTGAGTGGCTGGTTGAACAAATTAACAAATCTCTTGCTGTAGGCAAACGACGCACTGGCAGATCCATAAGCATTCTTGATATCTATGGCTTTGAATCATTTGATAGGAATAGTTTTGAACAGTTCTGTATTAACTATGCAAATGAGAGACTACAGCAGCATTTCAATCGTCATTTATTTAAGCTAGAGCAGGAGGAATATATTCAAGATGGCATCGATTGGGCAAAAGTTGATTTTGACGACAATCAAGATTGTCTGAGTCTGTTTGAAAAGAAACCTTTGGGATTGTTGTCCCTGTTAGACGAGGAGTCTACTTTTCCAAATGGCACAGATCTGACCTTCGCGAACAAGCTAAAGCAGCATTTGGGTCCTAATTCATCGTTTAGAGGAGAACGAGGGAAAGCCTTCACTGTCTGTCATTATGCAGGAGAGGTCACTTACGACACAACTGGTTTTCTGGAGAAAAACAGGGACTTGCTACATTTAGATTCTATTCAACTCCTATCCTCATGCTCATGTCATCTCCCTCAGATTTTTGCATCCAACATGTTAACTCAGTCGGAAAAGTCCATAGGTGGCACTTTACACAAGTCTGGTGGTGCAGAATCCCAAAAATTAAGTGTTGCAAGGAAGTTCAAGGGTCAATTATTCCAATTGATGCTCCGTCTTGAAAATACAACACCCCATTTCATCCGTTGTATAAAGCCCAACAACGTTCAATCTCCCAGATTGTATGAGCAAGGACTTGTATTACAACAGTTAAGATGTTGTGGGGTCCTAGAAGTGGTACGAATATCACGAGCTGGTTTTCCTACCCGGATGTCACATCAGAAATTTGCTAGAAGGTATGGTTTCCTTCTACAAGAAAGCATTGCATCACAGGATCCCCTTGGTGTCTCAGTCGCAATTCTTCATCATTTCAATATATTGCCTGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACTGGGCAGATTGGAGTTCTTGAAGATACAAGGAACCGCACGCTTCATGGTATTCTCTCTGTTCAAAGCTGTTACAGAGGGCACCTGGCTCGACGCCACCTTAAAGAGCTAAAGAGAGGGATTTCTGTACTTCAGTCATTTGCGCGTGGGGAGAAAGCAAGAAAAGAATATTCAATCTTGATACAAAGGCATAGGGCTGCTATTTCCATTCAAAAGAGTGTGAAAGCCAGAATTGCTAGTAAACGTTTGAAGAATGTCTGTGATGCATCACTTACGATACAATCAGTTATCCGTGGCTGGTTGGTTAGGAGATGCTCAGGAGATATTGGATTAATGAAACCTGGTGGCCTGACGGCAAATGGGTCAGGTGAAGTGCTTGTTAAGTCATCATTCCTTGCAGAATTACAACGCCGTGTCCTGAAAGCAGAGGCTGCTTTGAGAGAGAAAGAAGAGGAAAATGACATCCTCCATCAGCGCCTCCAACAGTATGAGAACCGTTGGTCAGAGTATGAGCTGAAAATGAAGTCAATGGAAGAGGTATGGCAGAGACAAATGAGATCCCTGCAATCTAGCCTCTCCATTGCAAAGAAAAGCTTAGCAGTTGATGATTCAGAGAGAAATTCTGATGCATCAGTAAATGCAAGTGATGACAGAGGATACAGTTGGGAAGTGGGTAGCAACAACACAGCTAATGAAAGCAATGGAGTAAGACCAATGAATGCAGGTCTCAGCGTCATTAGCCGATTGGCTGAAGAATTCGAACAAAGAAGTCAAGTCTTTGGCGATGACGCAAAGTTCTTAGTAGAGGTAAAATCCGGTCAAGTTGAGGCAAGTCTTGACCCAGATAGAGAACTAAGAAGGTTGAAACAAATGTTTGAAGCATGGAAGAAAGATTACGGGGGAAGGCTGCGTGAAACGAAAGTGATTTTGACTAAGCTTGGGAATGAAGGTGCCATGGATAGAGTGAAAAAGAAATGGTGGGGAAGGAGGAACAGCACAAGGTATAGTTAA 3528 41.13 MSRKSQVMVSLQSIKSMPVNSRFMIPQSAENLEDPYSRNVKNMEANSIVDGENGAVGDDAVNRHQYGTNGIDELNEDSPYNCNTTSVEERPTMDDGEDGFMPLPSPSVSASHSERRWGDTSSYTPRKILQSWFKLPNGNWDLVKILSTTGTESVVSLTDGKVLKVKAENLIPANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDVIYTKAGPVLVAINPFKKVDLYGNDYIDAYKRKTVESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLATLGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCTEGERSYHIFYQLCSGASPALKEKLNLRRAEEYKYLCQSSCFSISRVNDAEEFRVVMEALDVVHISKEDQNSVFAMLAAVLWLGNVSFSVIDNENHVEPVEDEGLQTVAKLIECEIEELKLALSTRKMRVGNDSIVQKLTLSQAIDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLGPNSSFRGERGKAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLTQSEKSIGGTLHKSGGAESQKLSVARKFKGQLFQLMLRLENTTPHFIRCIKPNNVQSPRLYEQGLVLQQLRCCGVLEVVRISRAGFPTRMSHQKFARRYGFLLQESIASQDPLGVSVAILHHFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILSVQSCYRGHLARRHLKELKRGISVLQSFARGEKARKEYSILIQRHRAAISIQKSVKARIASKRLKNVCDASLTIQSVIRGWLVRRCSGDIGLMKPGGLTANGSGEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQRQMRSLQSSLSIAKKSLAVDDSERNSDASVNASDDRGYSWEVGSNNTANESNGVRPMNAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEAWKKDYGGRLRETKVILTKLGNEGAMDRVKKKWWGRRNSTRYS* 1176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24121425 24135983 + CsaV3_5G029000.1 Csa05g02081 530468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02081 1175 MobiDBLite consensus disorder prediction 68 89 - -
Csa05g02081 1175 MobiDBLite consensus disorder prediction 68 94 - -
Csa05g02081 1175 Coils Coil 971 1019 - -
Csa05g02081 1175 Gene3D - 549 741 - -
Csa05g02081 1175 SMART MYSc_2a 173 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa05g02081 1175 Gene3D - 361 417 - -
Csa05g02081 1175 PANTHER MYOSIN 12 1173 - -
Csa05g02081 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 899 IPR027417 -
Csa05g02081 1175 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 126 175 IPR004009 GO:0003774|GO:0005524|GO:0016459
Csa05g02081 1175 Gene3D Myosin VI head, motor domain, U50 subdomain 418 526 - -
Csa05g02081 1175 MobiDBLite consensus disorder prediction 1042 1075 - -
Csa05g02081 1175 ProSiteProfiles IQ motif profile. 855 881 IPR000048 GO:0005515
Csa05g02081 1175 Pfam Myosin head (motor domain) 181 839 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa05g02081 1175 Gene3D Kinesin motor domain 178 784 IPR036961 -
Csa05g02081 1175 MobiDBLite consensus disorder prediction 1059 1075 - -
Csa05g02081 1175 PRINTS Myosin heavy chain signature 209 228 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa05g02081 1175 PRINTS Myosin heavy chain signature 263 288 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa05g02081 1175 PRINTS Myosin heavy chain signature 305 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa05g02081 1175 PRINTS Myosin heavy chain signature 537 565 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa05g02081 1175 PRINTS Myosin heavy chain signature 590 618 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa05g02081 1175 SMART iq_5 852 874 IPR000048 GO:0005515
Csa05g02081 1175 SMART iq_5 875 897 IPR000048 GO:0005515
Csa05g02081 1175 SMART iq_5 924 946 IPR000048 GO:0005515
Csa05g02081 1175 SMART iq_5 901 923 IPR000048 GO:0005515
Csa05g02081 1175 CDD MYSc_Myo8 193 839 IPR036022 -
Csa05g02081 1175 Gene3D - 785 852 - -
Csa05g02081 1175 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 12 1173 - -
Csa05g02081 1175 ProSiteProfiles IQ motif profile. 876 905 IPR000048 GO:0005515
Csa05g02081 1175 ProSiteProfiles Myosin motor domain profile. 179 851 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa05g02081 1175 Gene3D - 904 945 - -
Csa05g02081 1175 Gene3D - 857 903 - -
Csa05g02081 1175 Pfam IQ calmodulin-binding motif 928 943 IPR000048 GO:0005515
Csa05g02081 1175 Pfam IQ calmodulin-binding motif 858 874 IPR000048 GO:0005515
Csa05g02081 1175 Pfam IQ calmodulin-binding motif 878 896 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04130 Csa-Chr3:36200613 Csa05g02081 Csa-Chr5:24121425 0 dispersed
Csa05g02081 Csa-Chr5:24121425 Csa06g02004 Csa-Chr6:18024337 0 dispersed
Csa05g02081 Csa-Chr5:24121425 Csa03g01150 Csa-Chr3:9010824 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02081 - K10357 csv:101222101 2300.78