Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02091 ATGTTCTTTAAACAACTCTTCTCTTCTCTTCTCTTCCTTCTTGTTGTCATCGTCGGCGCCGCGGCTGCCGCTCGTCTGTCTTCTTCAACAAAGTTTCAATACCTTAATGTTAAAGCTACCAAGTTGGACTTCAATGACGGTCAAATTCTACACGCTCTTAATTTCTCCGACGGTCACCGGCAAGTTTCCGGTTATAAATCCGACAATAATACATTTAAACTCAACCTTCTCCATAGGGATAAACTGTCCCATGTCCATGGTCACCGTCGTGGGTTCAACGACCGCATGAAAAGAGACGCCATAAGAGTCGCCACCCTCGTCCGCCGCCTGTCCCACGGCGCCCCCGCCGCCGTGAAAGATAGCCGTTACAAGGTGGCTAATTTTGCCACGGATGTCATTTCAGGAATGGAAGCGGGGAGTGGAGAATACTTTGTTCGGATCGGAGTTGGAAGCCCGCCGAGGAATCAATATATGGTGATTGATTCCGGCAGTGATATTGTGTGGGTTCAATGTAAACCTTGTAGCCGATGCTACCAACAATCCGACCCGGTTTTCGATCCGGCTGACTCCTCCTCCTTCGCCGGCGTCTCTTGTGGCTCCGACGTTTGCGACCGCCTTGAGAACACCGGATGTAACGCCGGACGATGTCGGTATGAAGTGTCTTATGGGGACGGGTCTTACACTAAAGGCACTCTCGCTCTCGAAACTCTCACCGTCGGCCAAGTGATGATTCGTGATGTGGCAATTGGGTGTGGTCATACAAACCAAGGAATGTTCATAGGTGCCGCGGGTTTACTCGGACTCGGTGGAGGGTCAATGTCCTTCATCGGCCAACTAGGTGGTCAAACCGGGGGAGCATTCAGCTATTGTTTAGTGAGCCGAGGCACTGGCTCAACCGGAGCGTTAGAATTCGGCCGTGGAGCATTGCCAGTTGGCGCCACATGGATCTCCCTAATTCGAAACCCACGCGCTCCAAGCTTCTACTACATCGGACTCGCCGGGATCGGTGTTGGCGGTGTTCGAGTTTCAGTACCAGAAGAAACGTTTCAACTCACTGAGTACGGTACCAACGGTGTTGTAATGGACACTGGTACCGCCGTGACACGTTTTCCGACTGCGGCCTACGTAGCGTTCCGTGATTCGTTCACAGCCCAAACCAGCAACCTCCCACGAGCGCCTGGCGTTTCGATCTTCGACACGTGTTACGATCTCAACGGGTTTGAGTCAGTGCGAGTGCCCACGGTGTCGTTTTACTTCTCCGATGGACCGGTTCTGACATTGCCAGCGAGGAACTTTTTGATTCCAGTAGACGGCGGCGGAACGTTTTGCTTGGCGTTTGCTCCGTCGCCGTCAGGGCTTTCTATAATCGGAAACATCCAGCAAGAAGGAATTCAAATTTCATTCGATGGGGCTAATGGGTTCGTTGGATTTGGCCCAAATATTTGCTAA 1449 51.9 MFFKQLFSSLLFLLVVIVGAAAAARLSSSTKFQYLNVKATKLDFNDGQILHALNFSDGHRQVSGYKSDNNTFKLNLLHRDKLSHVHGHRRGFNDRMKRDAIRVATLVRRLSHGAPAAVKDSRYKVANFATDVISGMEAGSGEYFVRIGVGSPPRNQYMVIDSGSDIVWVQCKPCSRCYQQSDPVFDPADSSSFAGVSCGSDVCDRLENTGCNAGRCRYEVSYGDGSYTKGTLALETLTVGQVMIRDVAIGCGHTNQGMFIGAAGLLGLGGGSMSFIGQLGGQTGGAFSYCLVSRGTGSTGALEFGRGALPVGATWISLIRNPRAPSFYYIGLAGIGVGGVRVSVPEETFQLTEYGTNGVVMDTGTAVTRFPTAAYVAFRDSFTAQTSNLPRAPGVSIFDTCYDLNGFESVRVPTVSFYFSDGPVLTLPARNFLIPVDGGGTFCLAFAPSPSGLSIIGNIQQEGIQISFDGANGFVGFGPNIC* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24182870 24186159 - CsaV3_5G029100.1 Csa05g02091 530478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02091 482 PANTHER PROTEIN ASPARTIC PROTEASE IN GUARD CELL 2-LIKE 67 482 - -
Csa05g02091 482 SUPERFAMILY Acid proteases 138 482 IPR021109 -
Csa05g02091 482 Pfam Xylanase inhibitor C-terminal 328 478 IPR032799 -
Csa05g02091 482 Gene3D Acid Proteases 118 305 IPR021109 -
Csa05g02091 482 Gene3D Acid Proteases 312 482 IPR021109 -
Csa05g02091 482 ProSiteProfiles Peptidase family A1 domain profile. 143 478 IPR033121 -
Csa05g02091 482 CDD cnd41_like 142 482 IPR033873 -
Csa05g02091 482 Pfam Xylanase inhibitor N-terminal 143 305 IPR032861 -
Csa05g02091 482 PANTHER ASPARTYL PROTEASES 67 482 IPR001461 GO:0004190|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02091 - - - csv:101214091 926.006
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02091 Csa-Chr5:24182870 Csa07g01451 Csa-Chr7:14818611 1.11E-126 dispersed
Csa06g00645 Csa-Chr6:5363946 Csa05g02091 Csa-Chr5:24182870 1.85E-59 dispersed
Csa01g02175 Csa-Chr1:18873780 Csa05g02091 Csa-Chr5:24182870 1.66E-40 transposed
Csa02g02218 Csa-Chr2:19938618 Csa05g02091 Csa-Chr5:24182870 1.42E-47 transposed
Csa03g00275 Csa-Chr3:2237855 Csa05g02091 Csa-Chr5:24182870 2.87E-25 transposed
Csa04g02097 Csa-Chr4:21499124 Csa05g02091 Csa-Chr5:24182870 1.83E-78 transposed
Csa04g02609 Csa-Chr4:25570171 Csa05g02091 Csa-Chr5:24182870 5.00E-73 transposed
Csa05g00598 Csa-Chr5:3952051 Csa05g02091 Csa-Chr5:24182870 4.16E-50 transposed
Csa05g01465 Csa-Chr5:16537681 Csa05g02091 Csa-Chr5:24182870 0 transposed
Csa05g02862 Csa-Chr5:28960459 Csa05g02091 Csa-Chr5:24182870 5.46E-46 transposed
Csa07g02083 Csa-Chr7:20090433 Csa05g02091 Csa-Chr5:24182870 8.26E-74 transposed
Csa05g02091 Csa-Chr5:24182870 Csa05g02588 Csa-Chr5:27177093 3.19E-124 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g277 . . . . . Bpe10g00945 . Bma15g00079 . Cmo18g01052 . Cma18g01036 . Car18g00961 Sed07g2064 Cpe09g00282 . Bhi07g01357 Tan04g0891 Cmetu10g1611 Lac13g0470 Hepe01g1214 . . Cla05g02322 Cam05g2494 Cec05g2518 Cco05g2560 Clacu05g2488 Cmu05g2351 Cre05g2467 Cone13ag0848 Cone19ag0851 . . Lsi04g00280 Csa05g02091 Chy10g01124 Cme10g00282 Blo06g00969 . . . . . . . . . . . . . . . Cpe04g01410 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002230 2 2 1 2 2 2 3 2 2 1 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 2 2 1 63