Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02138 ATGGGAAAGCTTAGCCTTTTCAACTGCTGCAATGGTTTTCTTGAGAATTCTAAACCCTATTTTGCTATGATATCTTTGCAATTTGGATATGCTGGCATGAACATCATTTCCAAAGTCTCTCTTAGTAGAGGGATGAGTCATTACGTCCTCGTCGTTTATCGACATGTTTTTGCTACCGCTTCTATTGCCCCCTTCGTTCTCTTCTTCGAACGGAGAGGACAGCCAAGAATAACATTCAAAATTTTCATACAAATATTTATGTTGGCTTTGCTTGGCCCGGTGGTCGATCAGAATTTCTACTATGCTGGACTAAAGTATACTTCACCAACTTTCTCTTGTGCCATGAGCAACATACTGCCTGCAATGACGTTTGTGATGGCTGTGATCTTTAGGATGGAAAAATTGGATATGAAGAAATTGAGATGCCAAGCAAAAGTATTGGGAACTTTGGTGACAGTGGGTGGAGCAATGCTAATGACTTTATACAAAGGTCCACCTCTTCAAATGCCTTGGACTAAACATAATTCTCATCTCACGAATTCTAATGAGTCCTCCAACGACAAAGATTGGTTCAAAGGCTCCATTTTCCTCATCATTGCCACTCTTGCTTGGTCTTCTCTCTTCGTCTTGCAGGTATATATATATATATATATATATATATATGTTTATGCATGTGTGAATCAGGCGTTGAAGACGTACGAAAACCATCAATTTACTCTCACTACTCTTATGTGCTTTGTGGGAACTTTACAAGCTATAGCTGTGACTTTAGTAGCTGAACACAAAGCTTCTGTTTGGAGAATTGGTTGGGATATGAATCTTCTTGCTGCTGCCTATGCTGGAATAGTGACATCAAGTATATCATACTATGTACAAGGATTAGTGATGAAAAAGAAAGGACCTGTATTTGCAACTGCATTTAGCCCTTTGATGATGATAATCGTTGCCATCATGGGCTCTTTCATCCTTGCTGAAAAGATTTTTCTTGGAGGAATAATAGGATCCATCTTGATAGTATTTGGGTTATACTCAGTGCTTTGGGGGAAACACAAAGAGAGTTTGGAGAACAAATTAAGTGGTTCTGATGATAATGAAATACCAGAAGTGATCAAGGCTTCCTCTAATTCTCAACCAAATACTAATAATAATAACACTAATAACACCATTTTTATTTCCATGCCTACCCCTGAAAACCCCATCAAACCCAACCAAATGCCATGA 1221 38.57 MGKLSLFNCCNGFLENSKPYFAMISLQFGYAGMNIISKVSLSRGMSHYVLVVYRHVFATASIAPFVLFFERRGQPRITFKIFIQIFMLALLGPVVDQNFYYAGLKYTSPTFSCAMSNILPAMTFVMAVIFRMEKLDMKKLRCQAKVLGTLVTVGGAMLMTLYKGPPLQMPWTKHNSHLTNSNESSNDKDWFKGSIFLIIATLAWSSLFVLQVYIYIYIYIYVYACVNQALKTYENHQFTLTTLMCFVGTLQAIAVTLVAEHKASVWRIGWDMNLLAAAYAGIVTSSISYYVQGLVMKKKGPVFATAFSPLMMIIVAIMGSFILAEKIFLGGIIGSILIVFGLYSVLWGKHKESLENKLSGSDDNEIPEVIKASSNSQPNTNNNNTNNTIFISMPTPENPIKPNQMP* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24490966 24493968 - CsaV3_5G029570.1 Csa05g02138 530525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02138 406 MobiDBLite consensus disorder prediction 371 406 - -
Csa05g02138 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 163 - -
Csa05g02138 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 266 351 - -
Csa05g02138 406 Pfam EamA-like transporter family 192 346 IPR000620 GO:0016020|GO:0016021
Csa05g02138 406 Pfam EamA-like transporter family 19 159 IPR000620 GO:0016020|GO:0016021
Csa05g02138 406 MobiDBLite consensus disorder prediction 371 398 - -
Csa05g02138 406 PANTHER WAT1-RELATED PROTEIN 13 381 IPR030184 GO:0016021|GO:0022857
Csa05g02138 406 PANTHER WAT1-RELATED PROTEIN 13 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01903 Csa-Chr4:18776633 Csa05g02138 Csa-Chr5:24490966 2.98E-158 dispersed
Csa05g00146 Csa-Chr5:801108 Csa05g02138 Csa-Chr5:24490966 1.45E-69 dispersed
Csa05g02138 Csa-Chr5:24490966 Csa04g01463 Csa-Chr4:14463477 1.84E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02138 - - csv:101206648 743.806