Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g02171 | ATGGCTTCCACCTCAGCTTCCTCCGCCGCCACCCACCACCTCGACGCATCACTCGTCATCGCTACCAGATCAGACACTACCGCCGCCGCCGATCCTTCTCCCCGATCTACCTCTACTGCCAACGCTGCTAACAAGCGTTCTACTAAAGATCGTCACACGAAGGTCGAAGGTCGTGGCCGTCGTATCCGTATGCCGGCCACTTGTGCAGCTAGGGTTTTTCAATTGACGCGTGAATTAGGCCATAAATCCGACGGTGAGACTATTGAGTGGCTTCTTCAACAAGCTGAGCCGGCTATAATTGCGGCTACTGGTACTGGTACAATTCCGGCTAATTTCTCCTCCTTGAATATCTCGATTCGTAGTAGTGGATCTACTCTCTCTGCTCCTCCTTCCAAATCCGCTCCTCATTCGTTTCATGGCGCTGCTTTGGCTCTCGCTCATCATCCCCACGCTTACGAAGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCACCAGCAACAGCAACAACAACAGCATCACCTCAATTTAATGACCGCTGATCAAATCGGCGAAGGGTTACCTAGCGGCGGAGGAGAATCGACGGATAACTATATGAGAAAACGATTCAGAGAGGATTTGTTTAAAGAAGATACACAATCTCCAGGGGAAAGTAGTGGAGGCGGTGGATCTCCTAAAGCAATGAAGACCGATCTGCAATTAGAGAAACAACAACAACAACCATCAGCGTCCTCATCGGGACTACTCCGGCCTGGAGCGGCGATGTGGGCGGTGGCGGCACCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTACCGGTGACGGCAGGTTCCGGCGGGGGAAATGTAGGGAATTCTTCTGGAGGAGGCGGCGGCGGCGGCGGTGGTGGTGATGGGGGATTGGAAGCTCATCAGATGTGGCCATTTTCGACGAGTGGTAACACATTGCAGGCGCCGTTGCATTTGATGCCGAGATTTAATATACCTGGAGGTGTGGAAATTCAGGCAGCAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCAGGAGGAGGAAGAGGCGGCGGTGGGCAATTGCAATTGGGTTCAATGTTGATGCAACAAGCAGCTGGAGGCGGCGGCGGTGGTTTGGGGGTATCGGAGACGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTATAATTCAAGATCGGGAAGTGGTTTCAATATTAATTCTGATAATCATCCATTGGAGCATCAGCATCAGCATCAGCATCATCATCATCATCATCATCATCATAATCCAGCTCATAATACTAATACTGATCATAATAGTGGAGATGAAGCTCCAAACACTTCCCAATGA | 1350 | 51.85 | MASTSASSAATHHLDASLVIATRSDTTAAADPSPRSTSTANAANKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGAALALAHHPHAYEEGFAHAALLGFHHQQQQQQQHHLNLMTADQIGEGLPSGGGESTDNYMRKRFREDLFKEDTQSPGESSGGGGSPKAMKTDLQLEKQQQQPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTAGSGGGNVGNSSGGGGGGGGGGDGGLEAHQMWPFSTSGNTLQAPLHLMPRFNIPGGVEIQAAAAAAAAAAAAGGGRGGGGQLQLGSMLMQQAAGGGGGGLGVSETNLGMLAALNAAYNSRSGSGFNINSDNHPLEHQHQHQHHHHHHHHHNPAHNTNTDHNSGDEAPNTSQ* | 450 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 24700297 | 24702322 | - | CsaV3_5G029900.1 | Csa05g02171 | 530558 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g02171 | 449 | Pfam | TCP family transcription factor | 47 | 177 | IPR017887 | - | |
Csa05g02171 | 449 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 3 | 449 | IPR005333 | GO:0003700 | |
Csa05g02171 | 449 | MobiDBLite | consensus disorder prediction | 402 | 449 | - | - | |
Csa05g02171 | 449 | MobiDBLite | consensus disorder prediction | 416 | 431 | - | - | |
Csa05g02171 | 449 | MobiDBLite | consensus disorder prediction | 24 | 61 | - | - | |
Csa05g02171 | 449 | MobiDBLite | consensus disorder prediction | 434 | 449 | - | - | |
Csa05g02171 | 449 | PANTHER | TRANSCRIPTION FACTOR TCP8 | 3 | 449 | - | - | |
Csa05g02171 | 449 | MobiDBLite | consensus disorder prediction | 208 | 249 | - | - | |
Csa05g02171 | 449 | MobiDBLite | consensus disorder prediction | 45 | 61 | - | - | |
Csa05g02171 | 449 | MobiDBLite | consensus disorder prediction | 232 | 248 | - | - | |
Csa05g02171 | 449 | ProSiteProfiles | TCP domain profile. | 48 | 102 | IPR017887 | - | |
Csa05g02171 | 449 | MobiDBLite | consensus disorder prediction | 24 | 44 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00228 | Csa-Chr1:1459334 | Csa05g02171 | Csa-Chr5:24700297 | 7.56E-47 | dispersed | |
Csa01g00533 | Csa-Chr1:3515792 | Csa05g02171 | Csa-Chr5:24700297 | 1.65E-43 | dispersed | |
Csa03g01668 | Csa-Chr3:12498549 | Csa05g02171 | Csa-Chr5:24700297 | 9.96E-33 | dispersed | |
Csa05g01450 | Csa-Chr5:15790556 | Csa05g02171 | Csa-Chr5:24700297 | 4.09E-36 | dispersed | |
Csa05g02171 | Csa-Chr5:24700297 | Csa06g00596 | Csa-Chr6:5060846 | 3.15E-36 | dispersed | |
Csa06g02596 | Csa-Chr6:22896867 | Csa05g02171 | Csa-Chr5:24700297 | 2.93E-34 | dispersed | |
Csa05g02171 | Csa-Chr5:24700297 | Csa05g02440 | Csa-Chr5:26363833 | 3.39E-47 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31804 | PF03634 | TCP | 1.30E-38 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g02171 | - | - | csv:101222378 | 696.427 |