Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02171 ATGGCTTCCACCTCAGCTTCCTCCGCCGCCACCCACCACCTCGACGCATCACTCGTCATCGCTACCAGATCAGACACTACCGCCGCCGCCGATCCTTCTCCCCGATCTACCTCTACTGCCAACGCTGCTAACAAGCGTTCTACTAAAGATCGTCACACGAAGGTCGAAGGTCGTGGCCGTCGTATCCGTATGCCGGCCACTTGTGCAGCTAGGGTTTTTCAATTGACGCGTGAATTAGGCCATAAATCCGACGGTGAGACTATTGAGTGGCTTCTTCAACAAGCTGAGCCGGCTATAATTGCGGCTACTGGTACTGGTACAATTCCGGCTAATTTCTCCTCCTTGAATATCTCGATTCGTAGTAGTGGATCTACTCTCTCTGCTCCTCCTTCCAAATCCGCTCCTCATTCGTTTCATGGCGCTGCTTTGGCTCTCGCTCATCATCCCCACGCTTACGAAGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCACCAGCAACAGCAACAACAACAGCATCACCTCAATTTAATGACCGCTGATCAAATCGGCGAAGGGTTACCTAGCGGCGGAGGAGAATCGACGGATAACTATATGAGAAAACGATTCAGAGAGGATTTGTTTAAAGAAGATACACAATCTCCAGGGGAAAGTAGTGGAGGCGGTGGATCTCCTAAAGCAATGAAGACCGATCTGCAATTAGAGAAACAACAACAACAACCATCAGCGTCCTCATCGGGACTACTCCGGCCTGGAGCGGCGATGTGGGCGGTGGCGGCACCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTACCGGTGACGGCAGGTTCCGGCGGGGGAAATGTAGGGAATTCTTCTGGAGGAGGCGGCGGCGGCGGCGGTGGTGGTGATGGGGGATTGGAAGCTCATCAGATGTGGCCATTTTCGACGAGTGGTAACACATTGCAGGCGCCGTTGCATTTGATGCCGAGATTTAATATACCTGGAGGTGTGGAAATTCAGGCAGCAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCAGGAGGAGGAAGAGGCGGCGGTGGGCAATTGCAATTGGGTTCAATGTTGATGCAACAAGCAGCTGGAGGCGGCGGCGGTGGTTTGGGGGTATCGGAGACGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTATAATTCAAGATCGGGAAGTGGTTTCAATATTAATTCTGATAATCATCCATTGGAGCATCAGCATCAGCATCAGCATCATCATCATCATCATCATCATCATAATCCAGCTCATAATACTAATACTGATCATAATAGTGGAGATGAAGCTCCAAACACTTCCCAATGA 1350 51.85 MASTSASSAATHHLDASLVIATRSDTTAAADPSPRSTSTANAANKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGAALALAHHPHAYEEGFAHAALLGFHHQQQQQQQHHLNLMTADQIGEGLPSGGGESTDNYMRKRFREDLFKEDTQSPGESSGGGGSPKAMKTDLQLEKQQQQPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTAGSGGGNVGNSSGGGGGGGGGGDGGLEAHQMWPFSTSGNTLQAPLHLMPRFNIPGGVEIQAAAAAAAAAAAAGGGRGGGGQLQLGSMLMQQAAGGGGGGLGVSETNLGMLAALNAAYNSRSGSGFNINSDNHPLEHQHQHQHHHHHHHHHNPAHNTNTDHNSGDEAPNTSQ* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24700297 24702322 - CsaV3_5G029900.1 Csa05g02171 530558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02171 449 Pfam TCP family transcription factor 47 177 IPR017887 -
Csa05g02171 449 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 449 IPR005333 GO:0003700
Csa05g02171 449 MobiDBLite consensus disorder prediction 402 449 - -
Csa05g02171 449 MobiDBLite consensus disorder prediction 416 431 - -
Csa05g02171 449 MobiDBLite consensus disorder prediction 24 61 - -
Csa05g02171 449 MobiDBLite consensus disorder prediction 434 449 - -
Csa05g02171 449 PANTHER TRANSCRIPTION FACTOR TCP8 3 449 - -
Csa05g02171 449 MobiDBLite consensus disorder prediction 208 249 - -
Csa05g02171 449 MobiDBLite consensus disorder prediction 45 61 - -
Csa05g02171 449 MobiDBLite consensus disorder prediction 232 248 - -
Csa05g02171 449 ProSiteProfiles TCP domain profile. 48 102 IPR017887 -
Csa05g02171 449 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00228 Csa-Chr1:1459334 Csa05g02171 Csa-Chr5:24700297 7.56E-47 dispersed
Csa01g00533 Csa-Chr1:3515792 Csa05g02171 Csa-Chr5:24700297 1.65E-43 dispersed
Csa03g01668 Csa-Chr3:12498549 Csa05g02171 Csa-Chr5:24700297 9.96E-33 dispersed
Csa05g01450 Csa-Chr5:15790556 Csa05g02171 Csa-Chr5:24700297 4.09E-36 dispersed
Csa05g02171 Csa-Chr5:24700297 Csa06g00596 Csa-Chr6:5060846 3.15E-36 dispersed
Csa06g02596 Csa-Chr6:22896867 Csa05g02171 Csa-Chr5:24700297 2.93E-34 dispersed
Csa05g02171 Csa-Chr5:24700297 Csa05g02440 Csa-Chr5:26363833 3.39E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31804 PF03634 TCP 1.30E-38 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02171 - - csv:101222378 696.427