Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02171 ATGGCTTCCACCTCAGCTTCCTCCGCCGCCACCCACCACCTCGACGCATCACTCGTCATCGCTACCAGATCAGACACTACCGCCGCCGCCGATCCTTCTCCCCGATCTACCTCTACTGCCAACGCTGCTAACAAGCGTTCTACTAAAGATCGTCACACGAAGGTCGAAGGTCGTGGCCGTCGTATCCGTATGCCGGCCACTTGTGCAGCTAGGGTTTTTCAATTGACGCGTGAATTAGGCCATAAATCCGACGGTGAGACTATTGAGTGGCTTCTTCAACAAGCTGAGCCGGCTATAATTGCGGCTACTGGTACTGGTACAATTCCGGCTAATTTCTCCTCCTTGAATATCTCGATTCGTAGTAGTGGATCTACTCTCTCTGCTCCTCCTTCCAAATCCGCTCCTCATTCGTTTCATGGCGCTGCTTTGGCTCTCGCTCATCATCCCCACGCTTACGAAGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCACCAGCAACAGCAACAACAACAGCATCACCTCAATTTAATGACCGCTGATCAAATCGGCGAAGGGTTACCTAGCGGCGGAGGAGAATCGACGGATAACTATATGAGAAAACGATTCAGAGAGGATTTGTTTAAAGAAGATACACAATCTCCAGGGGAAAGTAGTGGAGGCGGTGGATCTCCTAAAGCAATGAAGACCGATCTGCAATTAGAGAAACAACAACAACAACCATCAGCGTCCTCATCGGGACTACTCCGGCCTGGAGCGGCGATGTGGGCGGTGGCGGCACCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTACCGGTGACGGCAGGTTCCGGCGGGGGAAATGTAGGGAATTCTTCTGGAGGAGGCGGCGGCGGCGGCGGTGGTGGTGATGGGGGATTGGAAGCTCATCAGATGTGGCCATTTTCGACGAGTGGTAACACATTGCAGGCGCCGTTGCATTTGATGCCGAGATTTAATATACCTGGAGGTGTGGAAATTCAGGCAGCAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCAGGAGGAGGAAGAGGCGGCGGTGGGCAATTGCAATTGGGTTCAATGTTGATGCAACAAGCAGCTGGAGGCGGCGGCGGTGGTTTGGGGGTATCGGAGACGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTATAATTCAAGATCGGGAAGTGGTTTCAATATTAATTCTGATAATCATCCATTGGAGCATCAGCATCAGCATCAGCATCATCATCATCATCATCATCATCATAATCCAGCTCATAATACTAATACTGATCATAATAGTGGAGATGAAGCTCCAAACACTTCCCAATGA 1350 51.85 MASTSASSAATHHLDASLVIATRSDTTAAADPSPRSTSTANAANKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGAALALAHHPHAYEEGFAHAALLGFHHQQQQQQQHHLNLMTADQIGEGLPSGGGESTDNYMRKRFREDLFKEDTQSPGESSGGGGSPKAMKTDLQLEKQQQQPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTAGSGGGNVGNSSGGGGGGGGGGDGGLEAHQMWPFSTSGNTLQAPLHLMPRFNIPGGVEIQAAAAAAAAAAAAGGGRGGGGQLQLGSMLMQQAAGGGGGGLGVSETNLGMLAALNAAYNSRSGSGFNINSDNHPLEHQHQHQHHHHHHHHHNPAHNTNTDHNSGDEAPNTSQ* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24700297 24702322 - CsaV3_5G029900.1 Csa05g02171 530558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02171 449 Pfam TCP family transcription factor 47 177 IPR017887 -
Csa05g02171 449 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 449 IPR005333 GO:0003700
Csa05g02171 449 MobiDBLite consensus disorder prediction 402 449 - -
Csa05g02171 449 MobiDBLite consensus disorder prediction 416 431 - -
Csa05g02171 449 MobiDBLite consensus disorder prediction 24 61 - -
Csa05g02171 449 MobiDBLite consensus disorder prediction 434 449 - -
Csa05g02171 449 PANTHER TRANSCRIPTION FACTOR TCP8 3 449 - -
Csa05g02171 449 MobiDBLite consensus disorder prediction 208 249 - -
Csa05g02171 449 MobiDBLite consensus disorder prediction 45 61 - -
Csa05g02171 449 MobiDBLite consensus disorder prediction 232 248 - -
Csa05g02171 449 ProSiteProfiles TCP domain profile. 48 102 IPR017887 -
Csa05g02171 449 MobiDBLite consensus disorder prediction 24 44 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02171 - - - csv:101222378 696.427
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00228 Csa-Chr1:1459334 Csa05g02171 Csa-Chr5:24700297 7.56E-47 dispersed
Csa01g00533 Csa-Chr1:3515792 Csa05g02171 Csa-Chr5:24700297 1.65E-43 dispersed
Csa03g01668 Csa-Chr3:12498549 Csa05g02171 Csa-Chr5:24700297 9.96E-33 dispersed
Csa05g01450 Csa-Chr5:15790556 Csa05g02171 Csa-Chr5:24700297 4.09E-36 dispersed
Csa05g02171 Csa-Chr5:24700297 Csa06g00596 Csa-Chr6:5060846 3.15E-36 dispersed
Csa06g02596 Csa-Chr6:22896867 Csa05g02171 Csa-Chr5:24700297 2.93E-34 dispersed
Csa05g02171 Csa-Chr5:24700297 Csa05g02440 Csa-Chr5:26363833 3.39E-47 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01450 . 44 265 TCP Transcription Factor Family AT5G23280 62.0 5.9e-64 241.1
Csa05g00601 . 34 257 TCP Transcription Factor Family AT5G23280 59.1 8.8e-60 227.3
Csa06g00596 . 65 324 TCP Transcription Factor Family AT2G45680 54.1 6.8e-66 248.1
Csa05g02440 . 70 164 TCP Transcription Factor Family AT3G47620 89.7 8.0e-41 165.2
Csa01g00533 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Csa05g02171 . 47 148 TCP Transcription Factor Family AT1G69690 78.8 2.7e-37 152.9
Csa03g02480 . 42 295 TCP Transcription Factor Family AT3G27010 54.6 1.2e-58 223.8
Csa06g00805 . 36 268 TCP Transcription Factor Family AT3G27010 51.6 1.1e-51 200.7
Csa05g00601 . 4 254 TCP Transcription Factor Family AT5G08330 54.8 2.8e-63 238.8
Csa05g01450 . 30 263 TCP Transcription Factor Family AT5G08330 59.3 9.0e-62 233.8
Csa04g01035 . 38 172 TCP Transcription Factor Family AT3G02150 57.4 1.1e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31804 PF03634 TCP 1.30E-38 No_clan Csa TF